Parental gene:

HNRNPA3, ENSG00000170144

Aliases:HNRNPA3, 2610510D13Rik, D10S102, FBRNP, HNRPA3
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Human (Homo sapiens)
Coordinates:2:178077290..178088686(+)


>ENSG00000170144
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGTCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTACGAGAAC
ATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGACCCCCAAACAAAACGTTCCAGGGGCTTTGGTTTT
GTGACTTATTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGA
GAGGTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGT
GGAAACTTTGGTGGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATA
TAATGGATTTGGAGGTGATGGTGGCAACTATGGCGGTGGTCCTGGTTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGAC
CAGGATATGGAAACCAAGGTGGTGGATATGGTGGAGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGCGGT
GGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAA
AGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATG
GTAGCAGAAGGTTCTAA

Library Parental gene expression (RPM)
bodymap2_adipose 347 .23 RPM
bodymap2_adrenal 535 .07 RPM
bodymap2_brain 339 .37 RPM
bodymap2_breast 267 .51 RPM
bodymap2_colon 432 .85 RPM
bodymap2_heart 101 .85 RPM
bodymap2_kidney 331 .49 RPM
bodymap2_liver 119 .24 RPM
bodymap2_lung 430 .05 RPM
bodymap2_lymph_node 274 .00 RPM
bodymap2_ovary 698 .84 RPM
bodymap2_prostate 327 .14 RPM
bodymap2_skeletal_muscle 119 .93 RPM
bodymap2_testis 412 .92 RPM
bodymap2_thyroid 465 .04 RPM
bodymap2_white_blood_cells 279 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021580 ortholog_one2one 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Dasypus novemcinctus ENSDNOG00000019022 ortholog_one2one 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Ficedula albicollis ENSFALG00000003215 ortholog_one2one 1 retrogene
retro_falb_15,
Felis catus ENSFCAG00000012146 ortholog_one2one 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Homo sapiens ENSG00000135486 within_species_paralog 57 retrogenes
retro_hsap_1021, retro_hsap_1042, retro_hsap_1082, retro_hsap_1240, retro_hsap_1276, retro_hsap_1282, retro_hsap_1287, retro_hsap_1481, retro_hsap_158, retro_hsap_1584, retro_hsap_1613, retro_hsap_1638, retro_hsap_1711, retro_hsap_1899, retro_hsap_1933, retro_hsap_2002, retro_hsap_2029, retro_hsap_2091, retro_hsap_2096, retro_hsap_2197, retro_hsap_2347, retro_hsap_2379, retro_hsap_2636, retro_hsap_2640, retro_hsap_2668, retro_hsap_2718, retro_hsap_2857, retro_hsap_291, retro_hsap_2917, retro_hsap_2944, retro_hsap_3049, retro_hsap_3055, retro_hsap_332, retro_hsap_3343, retro_hsap_3393, retro_hsap_3432, retro_hsap_3439, retro_hsap_3449, retro_hsap_3549, retro_hsap_3745, retro_hsap_3756, retro_hsap_3757, retro_hsap_394, retro_hsap_3979, retro_hsap_4011, retro_hsap_4084, retro_hsap_414, retro_hsap_4218, retro_hsap_4282, retro_hsap_437, retro_hsap_4747, retro_hsap_482, retro_hsap_4883, retro_hsap_668, retro_hsap_84, retro_hsap_845, retro_hsap_924,
Homo sapiens ENSG00000138668 other_paralog 1 retrogene
retro_hsap_4689,
Homo sapiens ENSG00000197451 other_paralog 1 retrogene
retro_hsap_962,
Gallus gallus ENSGALG00000009250 ortholog_one2one 1 retrogene
retro_ggal_10,
Gorilla gorilla ENSGGOG00000006130 ortholog_one2one 6 retrogenes
retro_ggor_1001, retro_ggor_1197, retro_ggor_14, retro_ggor_1736, retro_ggor_576, retro_ggor_702,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Macaca mulatta ENSMMUG00000001858 ortholog_one2one 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Mus musculus ENSMUSG00000059005 ortholog_one2many 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2one 1 retrogene
retro_psin_16,
Ictidomys tridecemlineatus ENSSTOG00000025125 ortholog_one2one 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2one 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2one 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_34 54.28 79.37
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2. retro_hsap_209 88.76 69.38
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3. retro_hsap_665 93.42 100.00
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4. retro_hsap_862 51.04 61.11
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5. retro_hsap_1117 86.65 100.00
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6. retro_hsap_1274 93.85 51.59
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7. retro_hsap_1572 82.27 73.54
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8. retro_hsap_2194 80.24 66.67
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9. retro_hsap_2664 76.11 94.44
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10. retro_hsap_2951 79.07 67.72
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11. retro_hsap_4764 88.98 100.00
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Download FASTA sequences of all ENSG00000170144 retrocopies