Parental gene:

Edf1, ENSMUSG00000015092

Aliases:Edf1, 0610008L11Rik, AA409425
Description:endothelial differentiation-related factor 1 [Source:MGI Symbol;Acc:MGI:1891227]
Organism:Mouse (Mus musculus)
Coordinates:2:25557846..25562082(+)


>ENSMUSG00000015092
ATGGCCGAGAGTGACTGGGACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCAAGTCTAAGCAGGC
CATCTTAGCGGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAGAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCA
TTACTAAAAACACAGCCAAGCTCGACCGGGAGACCGAGGAGCTGCATCACGACAGGGTGACCCTGGAGGTGGGCAAAGTG
ATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGGACCTGGCCACGAAAATCAATGAGAAGCCGCAAGTCATCGC
AGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGG
GGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 38 .74 RPM
SRP007412_cerebellum 52 .58 RPM
SRP007412_heart 73 .09 RPM
SRP007412_kidney 72 .53 RPM
SRP007412_liver 81 .79 RPM
SRP007412_testis 90 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013266 ortholog_one2one 2 retrogenes
retro_amel_1569, retro_amel_996,
Canis familiaris ENSCAFG00000019544 ortholog_one2one 4 retrogenes
retro_cfam_1283, retro_cfam_1812, retro_cfam_363, retro_cfam_895,
Callithrix jacchus ENSCJAG00000011166 ortholog_one2many 1 retrogene
retro_cjac_374,
Erinaceus europaeus ENSEEUG00000009565 ortholog_one2one 1 retrogene
retro_eeur_635,
Loxodonta africana ENSLAFG00000026812 ortholog_one2one 1 retrogene
retro_lafr_751,
Macropus eugenii ENSMEUG00000015037 possible_ortholog 7 retrogenes
retro_meug_108, retro_meug_1742, retro_meug_1805, retro_meug_2070, retro_meug_38, retro_meug_598, retro_meug_773,
Microcebus murinus ENSMICG00000016498 ortholog_one2one 1 retrogene
retro_mmur_312,
Macaca mulatta ENSMMUG00000005051 ortholog_one2many 1 retrogene
retro_mmul_89,
Monodelphis domestica ENSMODG00000017329 ortholog_one2one 1 retrogene
retro_mdom_1713,
Mustela putorius furo ENSMPUG00000011008 ortholog_one2one 1 retrogene
retro_mputfur_1377,
Rattus norvegicus ENSRNOG00000016272 ortholog_one2one 4 retrogenes
retro_rnor_1407, retro_rnor_2005, retro_rnor_2007, retro_rnor_2616,
Sorex araneus ENSSARG00000007191 possible_ortholog 1 retrogene
retro_sara_39,
Tupaia belangeri ENSTBEG00000014060 ortholog_one2one 4 retrogenes
retro_tbel_1404, retro_tbel_1950, retro_tbel_3538, retro_tbel_967,
Tursiops truncatus ENSTTRG00000002668 ortholog_one2one 2 retrogenes
retro_ttru_165, retro_ttru_894,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_688 95.27 100.00
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2. retro_mmus_809 78.63 87.84
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3. retro_mmus_3324 78.57 55.41
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Download FASTA sequences of all ENSMUSG00000015092 retrocopies