Parental gene:

CAPNS1, ENSOCUG00000013093

Aliases:None
Description:calpain, small subunit 1 (CAPNS1), mRNA [Source:RefSeq mRNA;Acc:NM_001082264]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018786:873088..881489(+)


>ENSOCUG00000013093
ATGTTCCTGGTTAACTCGTTCCTGAAGGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGCGGGGGCCTAGGGAATGT
TCTCGGAGGCCTGATCAGCGGGGCTGGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGAGCAGGCGGCGGCG
GAACAGCCATGCGCATCCTGGGCGGAGTCATCAGCGCCATCAGCGAGGCAGCTGCGCAGTACAACCCGGAGCCCCCGCCC
CCACGAACCCACTATTCCAACATTGAGGCCAACGAGAGCGAAGAGGTCCGGCAGTTCCGGAGACTGTTTGCCCAGCTGGC
CGGAGATGACATGGAGGTGAGTGCCACAGAACTCATGAACATTCTCAACAAGGTCGTGACCCGACACCCTGATCTGAAGA
CCGATGGCTTTGGCCTTGACACATGTCGCAGCATGGTGGCCGTGATGGACAGCGACACCACGGGCAAGCTGGGCTTTGAG
GAGTTCAAGTACCTGTGGAACAACATCAAAAAGTGGCAGGCCATATACAAACAGTTTGATGTTGACCGATCAGGGACCAT
CTGCAGCCGGGAACTGCCGGGAGCCTTTGAGGCAGCAGGGTTCCACCTGAATGAACATCTCTACAACATGATCATCCGAC
GCTATTCAGATGAGGCAGGAAACATGGATTTTGACAACTTCATCAGCTGCTTGGTCAGGCTGGACGCCATGTTCCGTGCC
TTCAAATCTCTTGACAAAGATGGCACTGGGCAAATCCAGGTGAACATCCAGGAGTGGCTGCAGCTGACGATGTACTCCTG
A

Library Parental gene expression (RPM)
SRP017611_brain 169 .65 RPM
SRP017611_kidney 198 .86 RPM
SRP017611_liver 30 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000000511 ortholog_one2one 1 retrogene
retro_acar_205,
Ailuropoda melanoleuca ENSAMEG00000001024 ortholog_one2one 1 retrogene
retro_amel_136,
Bos taurus ENSBTAG00000014872 ortholog_one2one 2 retrogenes
retro_btau_1126, retro_btau_692,
Canis familiaris ENSCAFG00000031314 ortholog_one2one 1 retrogene
retro_cfam_942,
Equus caballus ENSECAG00000012210 ortholog_one2one 1 retrogene
retro_ecab_707,
Echinops telfairi ENSETEG00000007650 ortholog_one2one 2 retrogenes
retro_etel_1190, retro_etel_60,
Felis catus ENSFCAG00000014149 ortholog_one2one 1 retrogene
retro_fcat_1691,
Microcebus murinus ENSMICG00000010255 ortholog_one2one 1 retrogene
retro_mmur_416,
Myotis lucifugus ENSMLUG00000024944 ortholog_one2one 1 retrogene
retro_mluc_2336,
Macaca mulatta ENSMMUG00000000249 possible_ortholog 2 retrogenes
retro_mmul_1334, retro_mmul_1567,
Monodelphis domestica ENSMODG00000014179 ortholog_one2one 1 retrogene
retro_mdom_410,
Mustela putorius furo ENSMPUG00000005617 ortholog_one2one 1 retrogene
retro_mputfur_444,
Otolemur garnettii ENSOGAG00000006992 ortholog_one2one 1 retrogene
retro_ogar_1956,
Ochotona princeps ENSOPRG00000016562 ortholog_one2one 2 retrogenes
retro_opri_181, retro_opri_486,
Procavia capensis ENSPCAG00000006353 ortholog_one2one 1 retrogene
retro_pcap_165,
Pelodiscus sinensis ENSPSIG00000012793 ortholog_one2one 1 retrogene
retro_psin_45,
Pteropus vampyrus ENSPVAG00000012885 ortholog_one2one 3 retrogenes
retro_pvam_1375, retro_pvam_639, retro_pvam_737,
Rattus norvegicus ENSRNOG00000045747 possible_ortholog 2 retrogenes
retro_rnor_1447, retro_rnor_2145,
Sorex araneus ENSSARG00000004266 ortholog_one2one 1 retrogene
retro_sara_215,
Sus scrofa ENSSSCG00000030149 ortholog_one2one 2 retrogenes
retro_sscr_495, retro_sscr_73,
Vicugna pacos ENSVPAG00000008074 ortholog_one2one 1 retrogene
retro_vpac_64,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1095 60.00 60.90
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Download FASTA sequences of all ENSOCUG00000013093 retrocopies