Parental gene: | SHC1, ENSPPYG00000000769 |
| Aliases: | None |
| Description: | SHC-transforming protein 1 [Source:RefSeq peptide;Acc:NP_001126253] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:96518914..96533580(+) |
>ENSPPYG00000000769
ATGGATCTCCTGCCCCCCAAGCCCAAGTACAATCCACTCCGGAATGAGTCTCTGTCATCGCTGGAGGAAGGGGCTTCTGG
GTCCACCCCCCCGGAGGAGCTGCCTTCTCCATCAGCTTCATCCCTGGGGCCCATCCTGCCTCCTCTGCCTGGGGACGATA
GTCCCACTACCCTGTGCTCCTTCTTCCCCCGGATGAGCAACCTGAGGCTGGCCAACCCGGCTGGGGGGCGCCCAGGGTCT
AAGGGGGAGCCAGGAAGGGCAGCCGATGATGGGGAGGGGATCGTAGGGGCAGCCATGCCAGACTCAGGCCCCCTACCCCT
CCTCCAGGACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTGGAAGGGGGCCAGCTGGGGGGCGAGGAGT
GGACCCGCCACGGGAGCTTTGTCAATAAGCCCACGCGGGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCCGGGGTT
TCCTACTTGGTTCGGTACATGGGCTGTGTGGAGGTCCTTCAGTCAATGCGTGCCCTGGACTTCAACACCCGGACTCAGGT
CACCAGGGAGGCCATCAGTCTGGTGTGTGAGGCTGTGCCGGGTGCTAAGGGGGCAACGAGGAGGAGAAAGCCCTGTAGCC
GCCCGCTCAGCTCTATCCTGGGGAGGAGTAACCTGAAATTTGCTGGAATGCCAATCACTCTCACCGTCTCCACCAGCAGC
CTCAACCTCATGGCCGCAGACTGCAAACAGATCATCGCCAACCACCACATGCAATCTATCTCATTTGCATCCGGCGGGGA
TCCGGACACAGCCGAGTATGTCGCCTACGTTGCCAAAGACCCTGTGAATCAGAGAGCCTGCCACATTCTGGAGTGTCCTG
AAGGGCTTGCCCAGGATGTCATCAGCACCATTGGCCAGGCCTTCGAGTTGCGCTTCAAACAATACCTCAGGAACCCACCC
AAACTGGTCACCCCTCATGACAGGATGGCTGGCTTTGATGGCTCAGCATGGGATGAGGAGGAGGAAGAGCCACCTGACCA
TCAGTACTATAATGACTTCCCGGGGAAGGAACCCCCCCTGGGGGGGGTGGTAGACATGAGGCTTCGGGAAGGAGCCGCTC
CAGGGGCTGCTCGATCCACCGCACCCAGTGCCCAGACCCCCAGCCACTTGGGAGCTACACTGCCTGTAGGACAGCCTGTT
GGGGGAGATCCAGAAGTCCGCAAACAGATGCCACCTCCACCACCCTGTCCAGCAGGTAGAGAGCTCTTTGATGATCCCTC
CTATGTCAACGTCCAGAACCTAGACAAGGCCCGGCAAGCAGTGGGTGGTGCTGGGCCCCCTAATCCTGCTGTCAATGGCA
GTGCACCCCGGGACCTGTTTGACATGAAGCCCTTCGAAGATGCTCTTCGGGTGCCTCCACCTCCCCAGTCGGTGTCCATG
GCTGAGCAGCTCCGAGGGGAGCCCTGGTTCCACGGGAAGCTGAGCCGGCGGGAGGCTGAGGCACTGCTGCAGCTCAACGG
GGACTTCCTGGTGCGGGAGAGCACGACCACACCTGGCCAGTATGTGCTCACTGGCTTGCAGAGTGGGGGGCCCAAGCATT
TGCTACTGGTGGACCCTGAGGGTGTTCGGACTAAGGATCACCGCTTTGAGAGTGTCAGTCACCTTATCAGCTACCACATG
GACAATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGTCTACAGCAACCTGTGGAGCGGAAACTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 47 .72 RPM |
| SRP007412_cerebellum | 28 .33 RPM |
| SRP007412_heart | 24 .93 RPM |
| SRP007412_kidney | 65 .73 RPM |
| SRP007412_liver | 62 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009236 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000160691 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011515 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001397 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000011380 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_3643 | 83.48 | 100.00 | Please wait, loading  |
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Download FASTA sequences of all ENSPPYG00000000769 retrocopies