Parental gene:

RPS20, ENSSHAG00000011200

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL841257.1:814202..818794(+)


>ENSSHAG00000011200
ATGGCGTTCAAAGACACCGGCAAGACACTTGTGGAGCCCGAAGTGGCCATTCATCGGATCCGCATCACTCTAACCAGCCG
CAATGTGAAGTCTCTCGAGAAAGTGTGTGCTGACCTAATTAGAGGAGCCAAAGAAAAGAACTTGAAAGTGAAGGGACCTG
TTCGAATGCCCACTAAGACACTTCGAATCACAACTAGAAAAACTCCTTGCGGTGAAGGTTCAAAGACTTGGGATCGCTTC
CAGATGAGAATCCACAAACGCCTTATTGATTTGCACAGTCCTTCTGAAATTGTAAAACAGATCACTTCTATCAGCATTGA
ACCAGGTGTAGAAGTGGAAGTCACCATTGCAGATGCCTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006087 ortholog_one2one 17 retrogenes
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2many 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2many 4 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Equus caballus ENSECAG00000012463 ortholog_one2one 4 retrogenes
Echinops telfairi ENSETEG00000003394 ortholog_one2many 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2many 21 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Myotis lucifugus ENSMLUG00000029059 ortholog_one2many 2 retrogenes
Macaca mulatta ENSMMUG00000021314 ortholog_one2many 1 retrogene
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2many 10 retrogenes
Ochotona princeps ENSOPRG00000011042 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Pteropus vampyrus ENSPVAG00000016402 ortholog_one2one 8 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes
Tursiops truncatus ENSTTRG00000016847 ortholog_one2one 9 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_135 77.14 57.98
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2. retro_shar_228 72.34 78.15
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3. retro_shar_418 57.28 83.19
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4. retro_shar_436 76.03 100.00
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5. retro_shar_441 67.80 98.32
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6. retro_shar_443 66.39 100.00
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7. retro_shar_450 64.42 84.87
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8. retro_shar_504 50.62 67.23
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9. retro_shar_544 72.06 57.14
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10. retro_shar_785 66.67 87.39
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Download FASTA sequences of all ENSSHAG00000011200 retrocopies