Parental gene:

TUBA1B, ENSSSCG00000000190

Aliases:TUBA1B, TUBA3
Description:Sus scrofa tubulin, alpha 1b (TUBA1B), mRNA. [Source:RefSeq mRNA;Acc:NM_001044544]
Organism:Pig (Sus scrofa)
Coordinates:5:15556614..15560006(-)


>ENSSSCG00000000190
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAAGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATCCAGCCCGATGGCCAGATGCCGAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGCGGGGGAACGGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAACGCCCAACCTACACTAATCTGAACCGCCTTATTAGCCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGGTTTGATGGGGCCCTGAACGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCCCGCATCCATTT
CCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACTAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCCTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGACGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCCCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAAGTACAGCGGG
CAGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTACGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGAGAGGAAGAAGGCGAGGAATACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 764 .13 RPM
SRP014902_testis 814 .59 RPM
SRP018288_heart 214 .81 RPM
SRP018288_kidney 190 .81 RPM
SRP018288_liver 79 .95 RPM
SRP018288_lung 415 .86 RPM
SRP018856_adipose 302 .94 RPM
SRP035408_brain 182 .11 RPM
SRP035408_liver 29 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012244 ortholog_one2one 1 retrogene
retro_btau_402,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Callithrix jacchus ENSCJAG00000020874 ortholog_one2one 2 retrogenes
retro_cjac_1603, retro_cjac_1861,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Homo sapiens ENSG00000123416 ortholog_one2one 1 retrogene
retro_hsap_808,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Macropus eugenii ENSMEUG00000011167 ortholog_one2one 4 retrogenes
retro_meug_1121, retro_meug_157, retro_meug_1616, retro_meug_1964,
Monodelphis domestica ENSMODG00000015206 ortholog_one2one 2 retrogenes
retro_mdom_1632, retro_mdom_348,
Mus musculus ENSMUSG00000023004 ortholog_one2one 6 retrogenes
retro_mmus_1562, retro_mmus_1607, retro_mmus_1742, retro_mmus_1987, retro_mmus_3297, retro_mmus_3327,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pan troglodytes ENSPTRG00000012950 ortholog_one2one 1 retrogene
retro_ptro_2158,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_380 83.33 54.99
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2. retro_sscr_702 74.91 61.86
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Download FASTA sequences of all ENSSSCG00000000190 retrocopies