Parental gene:

PCNP, ENSSSCG00000011955

Aliases:None
Description:PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023]
Organism:Pig (Sus scrofa)
Coordinates:13:166955321..166971762(-)


>ENSSSCG00000011955
ATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCTGAGAAGCCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAACGATCAG
CTGAAGAAGAAGCTGCAGACCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACA
AAGAAAGCTTCAGCCATATCCATCAAACTTGGCTCAACTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACCCT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCAGGACCAAATTCCTTCAATAAAGGAAAACATGGGTTTTCTGATAACCAGAAG
CTATGGGAACGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA

Library Parental gene expression (RPM)
SRP014902_placenta 6 .64 RPM
SRP014902_testis 17 .54 RPM
SRP018288_heart 30 .57 RPM
SRP018288_kidney 28 .07 RPM
SRP018288_liver 18 .39 RPM
SRP018288_lung 37 .57 RPM
SRP018856_adipose 30 .57 RPM
SRP035408_brain 16 .86 RPM
SRP035408_liver 21 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003777 ortholog_one2one 2 retrogenes
retro_amel_1086, retro_amel_1679,
Canis familiaris ENSCAFG00000009593 ortholog_one2one 3 retrogenes
retro_cfam_1850, retro_cfam_2074, retro_cfam_2160,
Choloepus hoffmanni ENSCHOG00000007972 ortholog_one2one 11 retrogenes
retro_chof_1170, retro_chof_1215, retro_chof_2070, retro_chof_2280, retro_chof_2290, retro_chof_2553, retro_chof_2575, retro_chof_594, retro_chof_651, retro_chof_806, retro_chof_819,
Callithrix jacchus ENSCJAG00000000508 possible_ortholog 6 retrogenes
retro_cjac_101, retro_cjac_1569, retro_cjac_1722, retro_cjac_3205, retro_cjac_3332, retro_cjac_401,
Dasypus novemcinctus ENSDNOG00000008873 ortholog_one2one 5 retrogenes
retro_dnov_1606, retro_dnov_259, retro_dnov_370, retro_dnov_910, retro_dnov_98,
Felis catus ENSFCAG00000029026 ortholog_one2one 2 retrogenes
retro_fcat_1767, retro_fcat_1822,
Gorilla gorilla ENSGGOG00000025423 possible_ortholog 4 retrogenes
retro_ggor_882, retro_ggor_901, retro_ggor_902, retro_ggor_994,
Loxodonta africana ENSLAFG00000005518 ortholog_one2one 2 retrogenes
retro_lafr_1189, retro_lafr_458,
Myotis lucifugus ENSMLUG00000005878 ortholog_one2one 5 retrogenes
retro_mluc_1010, retro_mluc_1818, retro_mluc_2423, retro_mluc_603, retro_mluc_816,
Macaca mulatta ENSMMUG00000017782 possible_ortholog 3 retrogenes
retro_mmul_1312, retro_mmul_1377, retro_mmul_2598,
Mustela putorius furo ENSMPUG00000011696 ortholog_one2one 1 retrogene
retro_mputfur_850,
Oryctolagus cuniculus ENSOCUG00000011110 possible_ortholog 7 retrogenes
retro_ocun_1072, retro_ocun_1144, retro_ocun_1496, retro_ocun_1537, retro_ocun_573, retro_ocun_687, retro_ocun_868,
Procavia capensis ENSPCAG00000007007 ortholog_one2one 3 retrogenes
retro_pcap_161, retro_pcap_194, retro_pcap_273,
Pteropus vampyrus ENSPVAG00000009886 ortholog_one2one 2 retrogenes
retro_pvam_1277, retro_pvam_421,
Sorex araneus ENSSARG00000001433 ortholog_one2one 2 retrogenes
retro_sara_265, retro_sara_626,
Tursiops truncatus ENSTTRG00000015008 ortholog_one2one 1 retrogene
retro_ttru_1167,
Vicugna pacos ENSVPAG00000012239 ortholog_one2one 1 retrogene
retro_vpac_564,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_451 85.85 59.55
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2. retro_sscr_696 65.22 50.56
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3. retro_sscr_728 65.22 50.56
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4. retro_sscr_1030 86.62 79.21
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5. retro_sscr_1124 80.00 63.48
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Download FASTA sequences of all ENSSSCG00000011955 retrocopies