RetrogeneDB ID: | retro_chof_62 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | GeneScaffold_1000:19228..19551(+) | ||
| Located in intron of: | ENSCHOG00000003694 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FBXO8 | ||
| Ensembl ID: | ENSCHOG00000004278 | ||
| Aliases: | None | ||
| Description: | F-box protein 8 [Source:HGNC Symbol;Acc:13587] |
Retrocopy-Parental alignment summary:
>retro_chof_62
CTATGCAAATCCACTTGGGGTCACCGATCCATCTACAATAAGAACCCACCTCTAGGATTTCCTTTTAGAAAACTGTATAT
GCAGCTGGATGAAGGAAGCCTGACTTTCAATGCCAACCCAGATGAGGGAGCGAGCTACCGTATATCCAAGGGTATCATAG
ATGATTCGCTAAAGGAAATAGCAAAGTTTATCTTCTGTACAAGAACAGTAATTTGGAAGAAACCGAGAAACTTCTTAATG
AAAGAAGAGATGTCTTGGATGACCATGTAACATAGCATAATTTTAGAAATCAGTTCTTGCCAAATACACTGAGAGTATTT
TTT
ORF - retro_chof_62 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 83.49 % |
| Parental protein coverage: | 51.67 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEGVSYFMSKGILDDSPKEIAKFIFCTRTL |
| LCKSTWGH.SIYNKNPPLGF.FRKLYMQLDEGSLTFNANPDEG.SY..SKGI.DDS.KEIAKFIFCTRT. | |
| Retrocopy | LCKSTWGHRSIYNKNPPLGFPFRKLYMQLDEGSLTFNANPDEGASYRISKGIIDDSLKEIAKFIFCTRTV |
| Parental | NWKKLRIY-LDERRDVLDDLVTLHNFRNQFLPNALREFF |
| .WKK.R...L.ERRDVLDD.VT.HNFRNQFLPN.LR.FF | |
| Retrocopy | IWKKPRNF<LNERRDVLDDHVT*HNFRNQFLPNTLRVFF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_62 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004278 | 3 retrocopies |
retro_chof_1087, retro_chof_381, retro_chof_62 ,
|