RetrogeneDB ID: | retro_hsap_1523 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:90818360..90818948(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000228998 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PERP | ||
Ensembl ID: | ENSG00000112378 | ||
Aliases: | PERP, KCP1, KRTCAP1, PIGPC1, THW, dJ496H19.1 | ||
Description: | PERP, TP53 apoptosis effector [Source:HGNC Symbol;Acc:17637] |
Percent Identity: | 82.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MIRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHGQTSSLWWKC-SQEGGGSG---SYEEGCQ |
MIRCGLACERCRWIL.LLLLSAIAFDIIALAGRGWLQSSD..QTSSLWW.C.S...GG.G...S.E.GC. | |
Retrocopy | MIRCGLACERCRWILTLLLLSAIAFDIIALAGRGWLQSSDRVQTSSLWWRC>SFHRGGGGGSGS*EDGCH |
Parental | SLMEYAWGRAA-AAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQ |
SLMEYAWGRAA.AAMLF.G..ILVICFILSFF.LC.PQ.LVFLRVIGGLLALAAVFQIISLVIYPVKYTQ | |
Retrocopy | SLMEYAWGRAA<AAMLFWGVSILVICFILSFFVLCVPQILVFLRVIGGLLALAAVFQIISLVIYPVKYTQ |
Parental | TFTLHANPAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDLLGNAKPRYFYTSA |
..T....PAVT.IYNWA.GFGWAA.IILIGCAFF.CCLP..EDDLLGN.KPRYFYTSA | |
Retrocopy | PSTFMPSPAVTSIYNWACGFGWAAMIILIGCAFFCCCLPSCEDDLLGNTKPRYFYTSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 1 .27 RPM | 96 .33 RPM |
bodymap2_adrenal | 1 .76 RPM | 24 .09 RPM |
bodymap2_brain | 1 .10 RPM | 12 .10 RPM |
bodymap2_breast | 1 .13 RPM | 158 .76 RPM |
bodymap2_colon | 1 .22 RPM | 170 .62 RPM |
bodymap2_heart | 1 .02 RPM | 101 .81 RPM |
bodymap2_kidney | 0 .60 RPM | 66 .72 RPM |
bodymap2_liver | 0 .49 RPM | 156 .06 RPM |
bodymap2_lung | 1 .90 RPM | 124 .72 RPM |
bodymap2_lymph_node | 1 .26 RPM | 35 .41 RPM |
bodymap2_ovary | 2 .51 RPM | 46 .17 RPM |
bodymap2_prostate | 1 .26 RPM | 221 .02 RPM |
bodymap2_skeletal_muscle | 0 .93 RPM | 11 .73 RPM |
bodymap2_testis | 0 .83 RPM | 41 .01 RPM |
bodymap2_thyroid | 2 .62 RPM | 93 .72 RPM |
bodymap2_white_blood_cells | 0 .96 RPM | 7 .19 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CFW | POLR2A | 15:90818178..90818608 |
ENCFF002CFX | POLR2A | 15:90818297..90818504 |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1165 |
Pongo abelii | retro_pabe_1267 |
Macaca mulatta | retro_mmul_2156 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020097 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019024 | 1 retrocopy | |
Homo sapiens | ENSG00000112378 | 2 retrocopies |
retro_hsap_1523 , retro_hsap_2901,
|
Gorilla gorilla | ENSGGOG00000028340 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004872 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013979 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001473 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000997 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014930 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004238 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011669 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017043 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .64 RPM |
CEU_NA11843 | 0 .26 RPM |
CEU_NA11930 | 0 .81 RPM |
CEU_NA12004 | 0 .84 RPM |
CEU_NA12400 | 0 .46 RPM |
CEU_NA12751 | 0 .92 RPM |
CEU_NA12760 | 0 .81 RPM |
CEU_NA12827 | 0 .71 RPM |
CEU_NA12872 | 0 .68 RPM |
CEU_NA12873 | 0 .86 RPM |
FIN_HG00183 | 0 .49 RPM |
FIN_HG00277 | 0 .81 RPM |
FIN_HG00315 | 0 .58 RPM |
FIN_HG00321 | 0 .36 RPM |
FIN_HG00328 | 0 .47 RPM |
FIN_HG00338 | 0 .57 RPM |
FIN_HG00349 | 0 .74 RPM |
FIN_HG00375 | 0 .42 RPM |
FIN_HG00377 | 0 .45 RPM |
FIN_HG00378 | 0 .70 RPM |
GBR_HG00099 | 0 .73 RPM |
GBR_HG00111 | 0 .60 RPM |
GBR_HG00114 | 0 .71 RPM |
GBR_HG00119 | 0 .53 RPM |
GBR_HG00131 | 0 .78 RPM |
GBR_HG00133 | 0 .72 RPM |
GBR_HG00134 | 1 .00 RPM |
GBR_HG00137 | 0 .74 RPM |
GBR_HG00142 | 0 .83 RPM |
GBR_HG00143 | 0 .83 RPM |
TSI_NA20512 | 0 .42 RPM |
TSI_NA20513 | 0 .63 RPM |
TSI_NA20518 | 0 .78 RPM |
TSI_NA20532 | 0 .71 RPM |
TSI_NA20538 | 1 .24 RPM |
TSI_NA20756 | 0 .47 RPM |
TSI_NA20765 | 0 .93 RPM |
TSI_NA20771 | 0 .65 RPM |
TSI_NA20786 | 0 .65 RPM |
TSI_NA20798 | 1 .00 RPM |
YRI_NA18870 | 0 .61 RPM |
YRI_NA18907 | 1 .04 RPM |
YRI_NA18916 | 0 .65 RPM |
YRI_NA19093 | 0 .99 RPM |
YRI_NA19099 | 0 .48 RPM |
YRI_NA19114 | 0 .76 RPM |
YRI_NA19118 | 1 .04 RPM |
YRI_NA19213 | 0 .41 RPM |
YRI_NA19214 | 0 .61 RPM |
YRI_NA19223 | 0 .78 RPM |