RetrogeneDB ID: retro_meug_1772

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold5804:21948..22590(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNPDA2
• Ensembl ID: ENSMEUG00000015385
• Aliases: None
• Description: glucosamine-6-phosphate deaminase 2 [Source:HGNC Symbol;Acc:21526]

Sequence

>retro_meug_1772
AGCACTTCTCTTCAGTGCTACAAGAAGCTGATTGAATATTATAAGAACGGGGACCTCTCCTTCACTTACGTGAAGACATT
TAACATGGATGAGTATGTGGGCCTCCCACATAACCACCCTGAGAGCTACCACTCCTTCATGTGGAACAACTTCTTCAAGC
ACATTGACATTTCCCCTCAAAAAGTCTTTACCCTGGATGGGAATGCAGCTGATCTGTAGGCAGAATGTGACGCTTTTGAA
AAGAAGATCAAAGAGTCTGGAGGCATTGAGCTTTTTGTTGGAGGTATTGCTTCTGATGGGCACATCGCCTTCAATGAACC
TGGTTCAAGTATGGTGTCTAGGACCCCAGTGAAGACTCTGGCCGTGGATGCCATCATGGCCAATTCTTGGTTCTTCAATG
GAGATCTTTCAAAAGTCCCCACGACGGCTCTGACTGTGGGTGTGGGCACAGACATGGATGGCAGAGAGGTCATGATCTTA
ATTACGGGTGCCCACAAGGCATTTGCACTGCACAAGGCCATTGAGGTGGGGGTAAGCCATATGTGGACTGTGTCTGCCTT
CTAGCAGCACCCGCGTATAGTATTTGTATGTGATGAAGATGCCACACTGGAGCTTAAAGTCAAAACTGTTAAATATTTCA
AA

Alignment

ORF - retro_meug_1772 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.17 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  STPLGCYKKLIEYHKNGDLSFKYVKTFNMDEYVGLPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAS
          ST.L.CYKKLIEY.KNGDLSF.YVKTFNMDEYVGLP.NHPESYHS.MWNNFFKHIDI.P.....LDGNA.
Retrocopy STSLQCYKKLIEYYKNGDLSFTYVKTFNMDEYVGLPHNHPESYHSFMWNNFFKHIDISPQKVFTLDGNAA

Parental  DLQAECDAFEKKIEEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRIKTLAMDTILANAKYFDGDLSKVP
          DL.AECDAFEKKI.E.GGI.LFVGGI..DGHIAFNEPGSS.VSRT..KTLA.D.I.AN...F.GDLSKVP
Retrocopy DL*AECDAFEKKIKESGGIELFVGGIASDGHIAFNEPGSSMVSRTPVKTLAVDAIMANSWFFNGDLSKVP

Parental  TMALTVGVGTVMDAREXXXXXXXXXXXXALYKAIEEGVNHMWTVSAFQQHPRTIFVCDEDATLELRVKTV
          T.ALTVGVGT.MD.RE............AL.KAIE.GV.HMWTVSAF.QHPR..FVCDEDATLEL.VKTV
Retrocopy TTALTVGVGTDMDGREVMILITGAHKAFALHKAIEVGVSHMWTVSAF*QHPRIVFVCDEDATLELKVKTV

Parental  KYFK
          KYFK
Retrocopy KYFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1772 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1772 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015385	1 retrocopy	retro_meug_1772 ,
Macropus eugenii	ENSMEUG00000015442	1 retrocopy	retro_meug_655,
Monodelphis domestica	ENSMODG00000020593	1 retrocopy	retro_mdom_67,
Sorex araneus	ENSSARG00000004814	1 retrocopy	retro_sara_593,
Tarsius syrichta	ENSTSYG00000010930	1 retrocopy	retro_tsyr_806,
Tursiops truncatus	ENSTTRG00000016022	1 retrocopy	retro_ttru_891,
Vicugna pacos	ENSVPAG00000011080	1 retrocopy	retro_vpac_409,