RetrogeneDB - Retrocopy retro_mluc

                        
>retro_mluc_259
ATGGCCGCCGCCACGGCTCCGCGTCTGCAGGAACAGTCGGAGATGGAAGATGCTGATAATTCTGGAAAGAGTGTACACGA

AGAAAATGGAGAAGTATCAGAAGACCAATCTCAAAATAAGCACAGTCGTCACAAGAAAAAGAAGCATAAACACAGAAGTA

AGCATAAGAAACATAAACATTCCTTAGAAGAAGACAAGGATAAAAAACGTAAACATAAGAAGCGCAAAAGAAGAGAGGTT

GTAGATGCTTCTGACAAAGAAGGTTTGTCTCCGGCAAAAAGAACTAAATTTGATGATTTAGCGTTGCTGGAAGACTTGGA

AAAACAGAGAGCCTTGATTAAAGCTGAACTTGATAATGAGTTCATGGAAGGAAACGTCCGGTCAGGGATGGGGCCCATAT

TACAAGGTTATGAATCTGGCTCTGAAGAAGAGGGGGAAATTCATGAAAAGGCACGAAATGGAAATAGGTCTAGTATTAGA

TCTTCCACTACCAAGGGGAAACTTGAACTTATGGACAATAAAAATAGTACAAAAAGGCGAAGTAGAAGCAGATCCAAAGA

ACGGACTAGCCATAGGTCTGATAAAAAGAAAAGTAAGGGAAGTGTTAAAGAGAAGACAACTAGGAGCAAATCAAAGGAGA

GGAAAAAGTCTAAAAGTCCATCCAAAAGAAGTAAGTCTCAAGATCAAGCAAGAAAGTCAAAATCTCCTACCCTTAGAAGG

CGATCTCAGGAGAAAATTGGGAAGGCCGGATCTCCTACTGATGACAAGGTTAAGATTCAAGATAAAAGTAAGTCAAAAGA

TAGAAAAAAATCCCCAGTTATAAATGAAAGAAGTCGTGATCGAGGCAAAAAATCCAGATCGCCAGTTGACTTAAGAGGTA

AATCCAAAGACAGAAGGTCACGGTCCAAAGAGAGAAAGTCAAAACGGTCTGAAACTGATAAAGAAAAGAAGCCAATTAAA

TCTCCCTCTAAAGATGCTTCTTCTGGGAACGAAAATAGATCACCCAGTAGAAGACCTGGTCGTAGTCCTAAGAGAAGAAG

TTTCTCTCCAAAACAACGGGATAAATCCAGAAGAAGTAGATCTCCACTTTTAAATGATAGAAGGTCTAAGCAGAGCAAGT

CACCTTCTCGAAATCTGTCTCCCGGTAGAAGAGCTGAGAGCCGATCCTTGGAAAGAAAACTAAGGAGACGACTTTCTTCC

CCAAGAACACAACCTCGTGACGATATCCTCAGTAGACGCAAGAGATCAAAAGATGCCACCCCGATAAGTAAGTGGTCTCC

AACCCGAAGAAGAGCAAGTAGATCTCCCATTAGAAGGAGGTCTCGCTCCCCACTCAGGCGGAGCAGGTCTCCTAGAGGAA

GAAGCAGGTCCCCTCGGAGAAGGGATAGAGGTCGGAGAAGCAGATCACGTTTGAGAAGGCGGTCTCAATCACCTTCAGAA

GGTGGTCGTAGAAGTAGGAGCAGAAGCAAAGTAAAGGAGAATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTTGA

GCAAGAATCTTCATCTGAAGATAACCTCGAAGACTTTGAGGTAGAAGAAGAAGAAGATGAAGAGGCCCTAATAGAGCAGA

GAAGAATACAAAGGCAAGCAATTGTCCAGAAATATAAATATCTTGCTGACGATAGCAATAGGTCTGTGCCGTCTGAACCC

AGCAGCCCCCAGAGTAGTACTCGTACACGGTCACCTTCTCCAGATGACATTTTGGAAAGGGTAGCTGCTGATGTTAAAGA

GTATGAATGGGAAAATGTTGACACATTTGAGGCCTTGGTAAAAGCCAAGCATAATCTAATGACAGTTGAACCAAATAATG

GGTCAGCTCAGAAAAAGCTGTTGGCACTTGATATGTTTACAGAATCTGATGATATGTTTGCTGCATATTTTGATAGTGCT

CATCTTCGGGCTGCTGGCGTTGGAAAAGACTTTAAAGAGAATCCTAACCTCAGGGATAACTGGACTGATGCAGAAGGCTA

TTATCGTGTGAACATAGGCGAAGTGTTAGATGAGCGCTATAATGTGTATGGCTACACTGGTCAAGGTGTATTCAGTAATG

TCGTACGAGCCAGAGATTCTGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAACTCATGCAGAAA

ACTGGTTTAAAAGAACTCGAATTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAATTTCATTGTTTGCGGCTCTT

CAGACACTTTTATCACAAACAGCATCTCTGTCTCGTATTTGAGCCGCTCAGCATGAATTTACGAGAGGTGTTAAAAAAAT

ATGGTAAGGATGTTGGTCTTCATATTACAGCTGTAAGGTCCTATAGTCAGCAGTTGTTCTTGGCATTGAAACTCCTTAAA

AGATGCAATATCCTACATGCTGATATCAAGCCAGACAATATCCTGGTTAATGAATCAAAAACTATTTTAAAGCTCTGTGA

TTTTGGGTCGGCTTCACATGTTGCGGATAATGACATAACTCCTTATCTTGTCAGTCGATTTTATCGTGCTCCTGAAATCA

TTATAGGTAAAAGCTATGACTATGGCATAGATATGTGGTCTGTAGGTTGTACCTTATATGAACTCTATACTGGAAACATT

TTATTTCCTGGCAAAACCAACAACCATATGTTGAAGCTCACCATGGATCTCAAAGGAAAGATGCCAAATAAGATGATTCG

GAAAGGTGTATTCAAAGACCAACATTTTGATCAAAACCTCAATTTCATGTACATAGAAGTTGATAAAGTAACAGAGAAGG

AGAAAGTTACTGTCATGAGCACCATTAATCCAACTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGCGACTTCCTGAA

GACCAACGTAAAAAAGTACACCAGCTAAAAGACTTGTTGGACCAGATCCTAATGTTGGACCCAGCTAAACGGATTAGCAT

CAACCAGGCCCTACAGCATGTCTTTATCCAGGAAAAAATTTAA

ORF - retro_mluc_259 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	92.09 %
Parental protein coverage:	99.8 %
Number of stop codons detected:	0
Number of frameshifts detected:	0

Retrocopy - Parental Gene Alignment:

                                ParentalVAATGQESVTPDYRMEDADNSEKSIHEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDKKH
.AA...........MEDADNS.KS.HEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDK..
RetrocopyMAAATAPRLQEQSEMEDADNSGKSVHEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDK--
ParentalKHKHKHKKHKRKEVIDASDKEGLSPAKRTKLDDLALLEDLEKQRALIKAELDNELMEGKVQSGMGLILQG
..K.KHKK.KR.EV.DASDKEGLSPAKRTK.DDLALLEDLEKQRALIKAELDNE.MEG.V.SGMG.ILQG
Retrocopy--KRKHKKRKRREVVDASDKEGLSPAKRTKFDDLALLEDLEKQRALIKAELDNEFMEGNVRSGMGPILQG
ParentalYESGSEEEGEIHEKARNGNRSSTRSSTTKGKLELMDNKNSTKKRSKSRSKERTRHRSDKKKSKGGVEIVK
YESGSEEEGEIHEKARNGNRSS.RSSTTKGKLELMDNKNSTK.RS.SRSKERT.HRSDKKKSKG....VK
RetrocopyYESGSEEEGEIHEKARNGNRSSIRSSTTKGKLELMDNKNSTKRRSRSRSKERTSHRSDKKKSKGS---VK
ParentalEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPV
EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKA.SPTDDKVKI.DKSKSKDRKKSPV
RetrocopyEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKAGSPTDDKVKIQDKSKSKDRKKSPV
ParentalINERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSP
INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSG.ENRSPSRRPGRSP
RetrocopyINERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGNENRSPSRRPGRSP
ParentalKRRSLSPKQRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDI
KRRS.SPKQRDKSRRSRSPLLNDRRSKQSKSPSR.LSPGRRA.S....R......RRRLSSPRT.PRDDI
RetrocopyKRRSFSPKQRDKSRRSRSPLLNDRRSKQSKSPSRNLSPGRRAES----RSLERKLRRRLSSPRTQPRDDI
ParentalLSRRERSKDASPISRWSPSRRRASRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRS--
LSRR.RSKDA.PIS.WSP.RRRASRSPIRRRSRSPLRRSRSPR.RSRSPRRRDRGRRSRSRLRRRS.S..
RetrocopyLSRRKRSKDATPISKWSPTRRRASRSPIRRRSRSPLRRSRSPRGRSRSPRRRDRGRRSRSRLRRRSQSPS
ParentalRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSSEDNLEDFDVEEE-DEEALIEQRRIQRQAIVQKYKYLA
.GGRR.RSRSKVKE.KFKGSLSEGMKVEQESSSEDNLEDF.VEEE.DEEALIEQRRIQRQAIVQKYKYLA
RetrocopyEGGRRSRSRSKVKENKFKGSLSEGMKVEQESSSEDNLEDFEVEEEEDEEALIEQRRIQRQAIVQKYKYLA
ParentalEDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSAQKK
.DSN.SVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYE.ENVDTFEA.VKAKHNLMTVE.NNGSAQKK
RetrocopyDDSNRSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYEWENVDTFEALVKAKHNLMTVEPNNGSAQKK
ParentalLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQG
LLA.DMFTESDDMFAAYFDSA.LRAAG.GKDFKENPNLRDNWTDAEGYYRVNIGEVLD.RYNVYGYTGQG
RetrocopyLLALDMFTESDDMFAAYFDSAHLRAAGVGKDFKENPNLRDNWTDAEGYYRVNIGEVLDERYNVYGYTGQG
ParentalVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
VFSNVVRARD.ARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
RetrocopyVFSNVVRARDSARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
ParentalFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
FEPLSMNLREVLKKYGKDVGLHI.AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
RetrocopyFEPLSMNLREVLKKYGKDVGLHITAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
ParentalSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKG
SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTG.ILFPGKTNNHMLKL.MDLKG
RetrocopySASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGNILFPGKTNNHMLKLTMDLKG
ParentalKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTE.EKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
RetrocopyKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEKEKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
ParentalKDLLDQILMLDPAKRISINQALQHAFIQEKI
KDLLDQILMLDPAKRISINQALQH.FIQEKI
RetrocopyKDLLDQILMLDPAKRISINQALQHVFIQEKI

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_259 was not experimentally validated.

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000112739	1 retrocopy	retro_hsap_4212,
Gorilla gorilla	ENSGGOG00000006422	1 retrocopy	retro_ggor_2821,
Myotis lucifugus	ENSMLUG00000005901	1 retrocopy	retro_mluc_259 ,
Monodelphis domestica	ENSMODG00000009756	1 retrocopy	retro_mdom_1114,
Nomascus leucogenys	ENSNLEG00000011291	1 retrocopy	retro_nleu_1453,
Pan troglodytes	ENSPTRG00000017683	1 retrocopy	retro_ptro_2859,

	RetrogeneDB ID:	retro_mluc_259
Retrocopy location	Organism:	*Microbat (Myotis lucifugus)*
	Coordinates:	GL429998:737980..740983(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	ENSMLUG00000013280
	Aliases:	None
	Status:	KNOWN_PROTEIN_CODING
Parental gene information	Parental gene summary:
	Parental gene symbol:	None
	Ensembl ID:	ENSMLUG00000005901
	Aliases:	None
	Description:	None

Parental	VAATGQESVTPDYRMEDADNSEKSIHEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDKKH
	.AA...........MEDADNS.KS.HEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDK..
Retrocopy	MAAATAPRLQEQSEMEDADNSGKSVHEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDK--

Parental	KHKHKHKKHKRKEVIDASDKEGLSPAKRTKLDDLALLEDLEKQRALIKAELDNELMEGKVQSGMGLILQG
	..K.KHKK.KR.EV.DASDKEGLSPAKRTK.DDLALLEDLEKQRALIKAELDNE.MEG.V.SGMG.ILQG
Retrocopy	--KRKHKKRKRREVVDASDKEGLSPAKRTKFDDLALLEDLEKQRALIKAELDNEFMEGNVRSGMGPILQG

Parental	YESGSEEEGEIHEKARNGNRSSTRSSTTKGKLELMDNKNSTKKRSKSRSKERTRHRSDKKKSKGGVEIVK
	YESGSEEEGEIHEKARNGNRSS.RSSTTKGKLELMDNKNSTK.RS.SRSKERT.HRSDKKKSKG....VK
Retrocopy	YESGSEEEGEIHEKARNGNRSSIRSSTTKGKLELMDNKNSTKRRSRSRSKERTSHRSDKKKSKGS---VK

Parental	EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPV
	EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKA.SPTDDKVKI.DKSKSKDRKKSPV
Retrocopy	EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKAGSPTDDKVKIQDKSKSKDRKKSPV

Parental	INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSP
	INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSG.ENRSPSRRPGRSP
Retrocopy	INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGNENRSPSRRPGRSP

Parental	KRRSLSPKQRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDI
	KRRS.SPKQRDKSRRSRSPLLNDRRSKQSKSPSR.LSPGRRA.S....R......RRRLSSPRT.PRDDI
Retrocopy	KRRSFSPKQRDKSRRSRSPLLNDRRSKQSKSPSRNLSPGRRAES----RSLERKLRRRLSSPRTQPRDDI

Parental	LSRRERSKDASPISRWSPSRRRASRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRS--
	LSRR.RSKDA.PIS.WSP.RRRASRSPIRRRSRSPLRRSRSPR.RSRSPRRRDRGRRSRSRLRRRS.S..
Retrocopy	LSRRKRSKDATPISKWSPTRRRASRSPIRRRSRSPLRRSRSPRGRSRSPRRRDRGRRSRSRLRRRSQSPS

Parental	RGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSSEDNLEDFDVEEE-DEEALIEQRRIQRQAIVQKYKYLA
	.GGRR.RSRSKVKE.KFKGSLSEGMKVEQESSSEDNLEDF.VEEE.DEEALIEQRRIQRQAIVQKYKYLA
Retrocopy	EGGRRSRSRSKVKENKFKGSLSEGMKVEQESSSEDNLEDFEVEEEEDEEALIEQRRIQRQAIVQKYKYLA

Parental	EDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSAQKK
	.DSN.SVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYE.ENVDTFEA.VKAKHNLMTVE.NNGSAQKK
Retrocopy	DDSNRSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYEWENVDTFEALVKAKHNLMTVEPNNGSAQKK

Parental	LLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQG
	LLA.DMFTESDDMFAAYFDSA.LRAAG.GKDFKENPNLRDNWTDAEGYYRVNIGEVLD.RYNVYGYTGQG
Retrocopy	LLALDMFTESDDMFAAYFDSAHLRAAGVGKDFKENPNLRDNWTDAEGYYRVNIGEVLDERYNVYGYTGQG

Parental	VFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
	VFSNVVRARD.ARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
Retrocopy	VFSNVVRARDSARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV

Parental	FEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
	FEPLSMNLREVLKKYGKDVGLHI.AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
Retrocopy	FEPLSMNLREVLKKYGKDVGLHITAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG

Parental	SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKG
	SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTG.ILFPGKTNNHMLKL.MDLKG
Retrocopy	SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGNILFPGKTNNHMLKLTMDLKG

Parental	KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
	KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTE.EKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
Retrocopy	KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEKEKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL

Parental	KDLLDQILMLDPAKRISINQALQHAFIQEKI
	KDLLDQILMLDPAKRISINQALQH.FIQEKI
Retrocopy	KDLLDQILMLDPAKRISINQALQHVFIQEKI

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_mluc_259