RetrogeneDB ID: retro_mluc_265

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:1528655..1529396(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028124
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017357
• Aliases: None
• Description: Mediator of RNA polymerase II transcription subunit 6 [Source:UniProtKB/TrEMBL;Acc:G1PWP0]

Sequence

>retro_mluc_265
ATGGCGGCGGTGGATATCCAAGATAATCTACTGGGAATCTCTTTGGTTGACAGTACATGGATCCCCATTTTGAACAGTGG
AAGTGTCCTAGATTACTTTTCAGAAAGAAGTAATCCTTTTTACAACAGAACGTGTAATAATGAAGTGGTCAAAATGCAGA
GACTAACATTAGAACACTTAAATCAGATGGTTGGAGTGGAATACATCCTTTTACATGCTCAAGAGCCCATTCTTTTTATC
ATCCGGAAGCAACAGCGGCAGTCCCCTACCCAAGTTATCCCACTGGCTGATTACTATATCATTGCTGGAGTGATCTACCA
GGCACCAGACTTGGGATCAGTTATAAACTCTAGAGTGCTTACTGCGGTGCATGGCATTCAGTCAGCTTTTGATGAAGCTA
TGTCATACTGTCGATATCATCCTTCCAAAGGGTATTGGTGGCACTTCAAAGATCATGAAGAGCAAGAAAAAGTTAAACCT
AAAACCAAAAGGAAAGAAGAACCAAGCTCTATTTTCCAGAGGCAACGTGTGGATGCTTTACTCTTAGACCTCAGACAAAA
ATTTCCACCCAAATTTGTGCAGCAAAAGTCTGGAGAAAAGTCTGTCCCAGTGGATCAGACAAAGAAAGAGGCAGAACCTA
CACCAGAAACTGTGAAGTCTGATGAGAAGGAGACCACAAAGAACATCCAACAGACAGTGAGCACTAAAGGTCCCCCTGAA
AAACGAATGAGACTTCAGTGA

Alignment

ORF - retro_mluc_265 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.74 %
• Parental protein coverage: 97.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DNLLGISWVDSTWIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHLNQMVGVEYILLHAQEPI
          DNLLGIS.VDSTWIPILNSGSVLDYFSERSNPFY.RTCNNEVVKMQRLTLEHLNQMVGVEYILLHAQEPI
Retrocopy DNLLGISLVDSTWIPILNSGSVLDYFSERSNPFYNRTCNNEVVKMQRLTLEHLNQMVGVEYILLHAQEPI

Parental  LFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWW
          LFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWW
Retrocopy LFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWW

Parental  HFKDHEEQEKVKPKTKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQQKSGEKPVPVDQTKKEAEPTPET
          HFKDHEEQEKVKPKTKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQQKSGEK.VPVDQTKKEAEPTPET
Retrocopy HFKDHEEQEKVKPKTKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQQKSGEKSVPVDQTKKEAEPTPET

Parental  VKSDEKETTKNIQQTVSTKGPPEKRMRLQ
          VKSDEKETTKNIQQTVSTKGPPEKRMRLQ
Retrocopy VKSDEKETTKNIQQTVSTKGPPEKRMRLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_265 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000013091	1 retrocopy	retro_fcat_1612,
Myotis lucifugus	ENSMLUG00000017357	1 retrocopy	retro_mluc_265 ,
Monodelphis domestica	ENSMODG00000007174	3 retrocopies	retro_mdom_1190, retro_mdom_524, retro_mdom_625,
Otolemur garnettii	ENSOGAG00000001311	1 retrocopy	retro_ogar_2597,
Ochotona princeps	ENSOPRG00000008957	1 retrocopy	retro_opri_820,
Sorex araneus	ENSSARG00000002553	1 retrocopy	retro_sara_495,
Tupaia belangeri	ENSTBEG00000002302	1 retrocopy	retro_tbel_2272,