RetrogeneDB ID: | retro_mmul_1598 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:17656740..17657031(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSMMUG00000004502 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:RefSeq peptide;Acc:NP_001253138] |
Percent Identity: | 86.6 % |
Parental protein coverage: | 69.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSKRGRG.SSG.KF.ISLGLPVGAVINCADNTGAKNLYIISVK.IKG.LNRL.AAGVGDMVMATVKKGKP | |
Retrocopy | MSKRGRGRSSGVKFQISLGLPVGAVINCADNTGAKNLYIISVKAIKGWLNRLSAAGVGDMVMATVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLY |
ELRK.VHP..VIRQ.KSYRRKDG..L. | |
Retrocopy | ELRKMVHPEAVIRQ*KSYRRKDGKCLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .12 RPM | 102 .64 RPM |
SRP007412_brain_prefrontal_cortex | 1 .11 RPM | 104 .87 RPM |
SRP007412_cerebellum | 0 .52 RPM | 110 .75 RPM |
SRP007412_heart | 0 .82 RPM | 217 .17 RPM |
SRP007412_kidney | 0 .59 RPM | 219 .83 RPM |
SRP007412_liver | 0 .87 RPM | 157 .74 RPM |
SRP007412_testis | 1 .47 RPM | 73 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2522 |
Pan troglodytes | retro_ptro_1467 |
Gorilla gorilla | retro_ggor_1574 |