RetrogeneDB ID: retro_mputfur_1536

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897223.1:1078473..1078885(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM216
• Ensembl ID: ENSMPUG00000014169
• Aliases: None
• Description: transmembrane protein 216 [Source:HGNC Symbol;Acc:25018]

Sequence

>retro_mputfur_1536
AGAGGAAAAGGGCTGTCCTCCACCCCCTGGAAAACCTGTTCTTTCTGAGTGGGTGGTATTATGCTACCTATTCCTGCTGG
AACTCTTCATATTTCTGTACGAAGTTCTACTGCTACCATCTCCAACAGCTGATCTAGTAGAGGATGTGGTGATACCTCTT
GTGAGCCTTGGAATTGAAGGAGTGTGAGTCTTTTTTGGTACAAAAGGAATTCTCTGCCATTGTAAGATGCTACTTGGTAA
TAGGATGGACTTGACCTTCCCGTCTACCATGCTGTCCTCCTACTGCCTGCTGCTGCAGACCTCCATGCTCTGCCAGGATG
TCATCGTGAACAGCATCTTGCTCTTCTGTGGTTTGGAGCTGCTGCCGCTTTAGGTACTCACCCTGCCTGTTTCCTCCAGT
ATGGAGAGGATT

Alignment

ORF - retro_mputfur_1536 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.09 %
• Parental protein coverage: 93.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RGKRLSSTP-LEILFFLNGWYYATY-FLLELFIFLYKALLLPYPTANLVLDVVMLLLYLGIEVIRLFFGT
          RGK.LSSTP.LE.LFFL.GWYYATY.FLLELFIFLY..LLLP.PTA.LV.DVV..L..LGIE....FFGT
Retrocopy RGKGLSSTP<LENLFFLSGWYYATY<FLLELFIFLYEVLLLPSPTADLVEDVVIPLVSLGIEGV*VFFGT

Parental  KGNLCQRKMPLGISVALTFPSAMMASYYLLLQTYVLRLEAIMNSILLFFCGSELL-LEVLTLTAFSSMDR
          KG.LC..KM.LG....LTFPS.M..SY.LLLQT..L....I.NSILL.FCG.ELL.L.VLTL...SSM.R
Retrocopy KGILCHCKMLLGNRMDLTFPSTMLSSYCLLLQTSMLCQDVIVNSILL-FCGLELLPL*VLTLPVSSSMER

Parental  I
          I
Retrocopy I

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1536 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1536 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016592	1 retrocopy	retro_amel_1255,
Bos taurus	ENSBTAG00000021517	1 retrocopy	retro_btau_1184,
Canis familiaris	ENSCAFG00000016171	4 retrocopies	retro_cfam_1342, retro_cfam_331, retro_cfam_332, retro_cfam_333,
Monodelphis domestica	ENSMODG00000020362	1 retrocopy	retro_mdom_232,
Mustela putorius furo	ENSMPUG00000014169	4 retrocopies	retro_mputfur_1341, retro_mputfur_1536 , retro_mputfur_1537, retro_mputfur_1538,
Oryctolagus cuniculus	ENSOCUG00000001682	1 retrocopy	retro_ocun_799,