RetrogeneDB ID: retro_mputfur_805

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896950.1:697873..698471(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NIT2
• Ensembl ID: ENSMPUG00000011450
• Aliases: None
• Description: nitrilase family, member 2 [Source:HGNC Symbol;Acc:29878]

Sequence

>retro_mputfur_805
ATGGTGCTACGTCGGAGAGCCATGGCCTCTTTTCATTTGGTCCTCATCCAACTTCAGGTTTCTTTCATCAAATCAGATAA
CCTCACTCAAGCCTGTGGCCTTGTCTGGGAGGCAGCAAGAGGAGGAGCCAAAATAGTTGCTCTTCCAGAGTGCTTTAATT
CTTAAATTTGGTATGAAATATTTTCCTGAATATGCAGAGAGAATACCTGGTGAATCCACACAGAAGCTTTCTGAAGTAGC
AAAGGAGTGCAGCATATAGCTCATTGGAGTTTCCATTCTTGAAGAGGATGCTGGGAGATTATTTAACACCTGTGCTGTGT
TTAGACCTGATGGAACTTTACAGGTAGAGCACAGAAAGCTCCATCTGTTTGACATCGGTGTTTCCGGGAAAATTACATTA
CAAGAATCTAAAACATTGAGTCCTGGTGATAGTTTTTCCACAATTGATGCTCCTTACTGCTGAATAGGCCTGGGCATCTG
CTATGACACTGCTTTGTAGAGCTTGTGCAAATCTACATAGAGGGGCTGGCAGCTGTTAGTCTATTCTGGAGCTTTTAATT
TGACTTCCGGACCAGCCCACTGGGACAGAACTGAAAAA

Alignment

ORF - retro_mputfur_805 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.64 %
• Parental protein coverage: 70.67 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVLPGRAMATFRLALIQLQVSSVKSDNVTRACGLVQEAAAQGAKIVSLPECFNS-PYGTKYFPEYAEKIP
          MVL..RAMA.F.L.LIQLQVS..KSDN.T.ACGLV.EAA..GAKIV.LPECFNS...G.KYFPEYAE.IP
Retrocopy MVLRRRAMASFHLVLIQLQVSFIKSDNLTQACGLVWEAARGGAKIVALPECFNS>KFGMKYFPEYAERIP

Parental  GESTQKLSEVAKECGIYLIGGSIPEEDAGKLYNTCTVFGPDGTLLVKYRKLHLFDIDVPGKITFQESETL
          GESTQKLSEVAKEC.I.LIG.SI.EEDAG.L.NTC.VF.PDGTL.V..RKLHLFDI.V.GKIT.QES.TL
Retrocopy GESTQKLSEVAKECSI*LIGVSILEEDAGRLFNTCAVFRPDGTLQVEHRKLHLFDIGVSGKITLQESKTL

Parental  SPGDSFSTFDTPYCRVGLGICYDMRFAELAQVYAQRGCQLLVYPGAFNMTTGPAHWELLQR
          SPGDSFST.D.PYC..GLGICYD.....L......RG.QLLVY.GAFN.T.GPAHW.....
Retrocopy SPGDSFSTIDAPYC*IGLGICYDTAL*SLCKS-T*RGWQLLVYSGAFNLTSGPAHWDRTEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_805 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_805 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003980	1 retrocopy	retro_amel_1002,
Callithrix jacchus	ENSCJAG00000000590	1 retrocopy	retro_cjac_3014,
Homo sapiens	ENSG00000114021	1 retrocopy	retro_hsap_411,
Gorilla gorilla	ENSGGOG00000003724	1 retrocopy	retro_ggor_406,
Macaca mulatta	ENSMMUG00000020024	2 retrocopies	retro_mmul_1758, retro_mmul_505,
Mustela putorius furo	ENSMPUG00000011450	1 retrocopy	retro_mputfur_805 ,
Nomascus leucogenys	ENSNLEG00000002631	1 retrocopy	retro_nleu_1009,
Pan troglodytes	ENSPTRG00000015161	1 retrocopy	retro_ptro_315,