RetrogeneDB ID: | retro_rnor_353 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | 2:211706816..211707242(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSRNOG00000042105 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSRNOG00000042970 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_rnor_353
ATGTCCTGCCAGCAGAATCAGCAGCAGTGCCAACCCCCTCCTAAGTGCCCTCCCAAGTGCCAGACTCCTAAATGCCCTCC
AAAGTGCCCCCCTAAGTGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGCAGCT
CTGGTGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGCAGCTCTGGGGGAGGAGGCTGCTGCCTGAGCCACCACAGACCC
CGCAGATCTTTCCGTCGCCATCGCCACAGCTCTGGATGCTGCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGCAGTGG
CTGTTGTGGCAGCAGTGGTTGCTGTAGCAGCAGTGGCTGCTGTGGCAGCAGTGGTGGCAGCAGTGGTTGCTGTGGCAGTG
GCCAGCAGTCTGGGGACTGCTGCTGA
ORF - retro_rnor_353 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 90.34 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MSCQQSQQQCQPPAKCPPNCPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSGACCSSGGCCGSNSGGCC |
| MSCQQ.QQQCQP....PP.CPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSG.CCSSGGCCGS.SGGCC | |
| Retrocopy | MSCQQNQQQCQP----PPKCPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSGGCCSSGGCCGSSSGGCC |
| Parental | SSGGGGCCLSHHRPRRSLHRHRHSSGCCSSGGSSGCCGSSGCCGSSG-GSSGGCCGSSGGSSGCCGSSQQ |
| SSGGGGCCLSHHRPRRS..RHRHSSGCCSSGGSSGCCGSSGCCGSSG..SS.GCCGSSGGSSGCCGS.QQ | |
| Retrocopy | SSGGGGCCLSHHRPRRSFRRHRHSSGCCSSGGSSGCCGSSGCCGSSGCCSSSGCCGSSGGSSGCCGSGQQ |
| Parental | SGDCC |
| SGDCC | |
| Retrocopy | SGDCC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_353 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_353 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_353 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000042970 | 1 retrocopy |
retro_rnor_353 ,
|