RetrogeneDB ID: retro_tsyr_12

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_82791:4..394(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTSYG00000008028
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000012079
• Aliases: None
• Description: None

Sequence

>retro_tsyr_12
TATCTAAAGACTTCAGAAGAATACAAACTCGTGGGTGTTTTGCTTGGAGGTCGTTCAGTGAGTTCAAAAGCAACTGCTTC
TGGAATGTGTCATATTGAGCCAGATGATGCTGATGATTATGTTCAAGGTCTCATTTGTATTTCTTACCTACTGTACCATC
CAAAGCAGCAGCATAACCTCAGAGATGAAGATCTCTTCTGTATAAAAGTTTCTGAACTGTTTGTGTCAGGTTCAGCAGAT
GAAACGTGTGAAAAGGACTTGTTGGAGAAAGTGGCACAGAAAATGCAAGCTCTCAATAAAATCCATTGGATTGAGAAGGC
AAATAATTCCATGGCAGTGAAAGGATGTTTGACAAATGATGTTTTCAAAGAAATAAATACACAGATTTTG

Alignment

ORF - retro_tsyr_12 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.08 %
• Parental protein coverage: 57.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YLKTSGEYKLAGVFLGGRSMGSRAAASVMCHIEPDDADDFVRGLICISYPLHHPKQQHNLRDEDLFRIKD
          YLKTS.EYKL.GV.LGGRS..S.A.AS.MCHIEPDDADD.V.GLICISY.L.HPKQQHNLRDEDLF.IK.
Retrocopy YLKTSEEYKLVGVLLGGRSVSSKATASGMCHIEPDDADDYVQGLICISYLLYHPKQQHNLRDEDLFCIKV

Parental  PVLFVSGSADEMCEKNLLEKVAQKMQAPNKIHWIEKANHSMAVKGRSTNDVFKEINTQIL
          ..LFVSGSADE.CEK.LLEKVAQKMQA.NKIHWIEKAN.SMAVKG..TNDVFKEINTQIL
Retrocopy SELFVSGSADETCEKDLLEKVAQKMQALNKIHWIEKANNSMAVKGCLTNDVFKEINTQIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_12 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000002595	1 retrocopy	retro_dord_297,
Tarsius syrichta	ENSTSYG00000012079	1 retrocopy	retro_tsyr_12 ,
Vicugna pacos	ENSVPAG00000005321	1 retrocopy	retro_vpac_303,