RetrogeneDB ID:

retro_tsyr_906

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_236258:2185..2645(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MPHOSPH6
Ensembl ID:ENSTSYG00000001928
Aliases:None
Description:M-phase phosphoprotein 6 [Source:HGNC Symbol;Acc:7214]


Retrocopy-Parental alignment summary:






>retro_tsyr_906
ATGGCAGCCAAGTACAAAACCAAGCTGTCCAAGAGCCTGCTGCACGTAAAATTCATGCAAAGGGGACTGGACTCAGAAAC
CAAGAACAACGGGAAGAGGAAGAAAAGAAAACCATTAGTGAAGAGCACTGGTACTTGGGTTTGCCAGAGCTTAAAGAGAA
ATAGAGTTTCGTAATAAAAAGCAGAATTTCTTGTTATGTGAAGATCTTCTCCATAGAAGAATGGCATTCAGAGGATTTAA
TTATGGGGTTGAGAAATTAATGCTTCAGATGAATGCCAAGAACAAAACAGAAGTTATTAAAGATGAAGCGGTGGAGCTTG
ATGTGTCAGTTGAAGAGATGGCTAGAAGATATGAGACCTTGGTGGGGACAATTGGGAAAAAGTTTGACAGGAAGAGAGAC
TATGCCAATTATCAAGATGAAAATGGAGACATAAAACCGAGTAAAGGAAAGATGTTCTTT

ORF - retro_tsyr_906 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.98 %
Parental protein coverage: 96.88 %
Number of stop codons detected: 1
Number of frameshifts detected: 2


Retrocopy - Parental Gene Alignment:

ParentalMAAERKTKLSKNLLRMKFMQRGLDSETK-KQLEEEEKKIISEEHWYLDLPELKEKESFIIE-EQSFLLCE
MAA..KTKLSK.LL..KFMQRGLDSETK..Q.EEEEKK.ISEEHWYL.LPELKEK.SF.I...Q.FLLCE
RetrocopyMAAKYKTKLSKSLLHVKFMQRGLDSETK<EQREEEEKKTISEEHWYLGLPELKEK*SFVIK<KQNFLLCE
ParentalDLLYGRMSFRGFNPEVEKLMLQMNSKNKKEEVKDEAVELDVSDEEMARRYETLVGTIGKKFARKRDHANY
DLL..RM.FRGFN..VEKLMLQMN.KNK.E..KDEAVELDVS.EEMARRYETLVGTIGKKF.RKRD.ANY
RetrocopyDLLHRRMAFRGFNYGVEKLMLQMNAKNKTEVIKDEAVELDVSVEEMARRYETLVGTIGKKFDRKRDYANY
ParentalEEDENGDIKPSKAKKMF
..DENGDIKPSK.K..F
Retrocopy-QDENGDIKPSKGKMFF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.

EST - click to see more details

Tarsius syrichta was not studied using EST data.

TSS - click to see more details

Tarsius syrichta was not studied using FANTOM5 data.

Lab - click to see more details

retro_tsyr_906 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000001272 retrocopies
retro_chof_1602, retro_chof_740,
Callithrix jacchus ENSCJAG000000164985 retrocopies
retro_cjac_1730, retro_cjac_2976, retro_cjac_3135, retro_cjac_3136, retro_cjac_3283,
Dipodomys ordii ENSDORG000000110602 retrocopies
retro_dord_62, retro_dord_63,
Echinops telfairi ENSETEG000000102766 retrocopies
retro_etel_1269, retro_etel_1300, retro_etel_1307, retro_etel_749, retro_etel_795, retro_etel_855,
Homo sapiens ENSG000001356981 retrocopy
retro_hsap_353,
Gorilla gorilla ENSGGOG000000014051 retrocopy
retro_ggor_367,
Macropus eugenii ENSMEUG000000005801 retrocopy
retro_meug_726,
Myotis lucifugus ENSMLUG000000002681 retrocopy
retro_mluc_78,
Macaca mulatta ENSMMUG000000225752 retrocopies
retro_mmul_1786, retro_mmul_471,
Mus musculus ENSMUSG000000318432 retrocopies
retro_mmus_1998, retro_mmus_3662,
Nomascus leucogenys ENSNLEG000000107251 retrocopy
retro_nleu_2264,
Oryctolagus cuniculus ENSOCUG000000243412 retrocopies
retro_ocun_1042, retro_ocun_749,
Otolemur garnettii ENSOGAG000000125323 retrocopies
retro_ogar_1288, retro_ogar_1382, retro_ogar_583,
Pongo abelii ENSPPYG000000075921 retrocopy
retro_pabe_348,
Pan troglodytes ENSPTRG000000083981 retrocopy
retro_ptro_277,
Rattus norvegicus ENSRNOG000000500876 retrocopies
retro_rnor_1760, retro_rnor_2298, retro_rnor_2318, retro_rnor_2320, retro_rnor_2390, retro_rnor_2391,
Tupaia belangeri ENSTBEG000000131108 retrocopies
retro_tbel_1037, retro_tbel_1812, retro_tbel_3027, retro_tbel_32, retro_tbel_333, retro_tbel_4213, retro_tbel_4385, retro_tbel_4415,
Tarsius syrichta ENSTSYG00000001928 2 retrocopies
retro_tsyr_1511, retro_tsyr_906 ,


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