RetrogeneDB ID:

retro_zmay_60

Retrocopy
location
Organism:Maize (Zea mays)
Coordinates:4:126645313..126645701(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GRMZM2G358405
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_zmay_60
CAGACGTTTATGCAGCTCCGACTAACGAAATCCATGCGTGCAGGTAGGCAGGTACCTGTTGAGGGCAAGGGTGGCAGCGA
TGTGGCTAGGGCGCACTCCTCGATCGATGAGGCCGATGGCAAGGCTCTGCACGCCCCCGCCGAACTTCACGCTGGTGATG
CGTCGATCGCCTGGGCCGGCAGCGACGACGACGGTGACAAGTGATAAGGGCTGCCTGGCTGAGGCGGTGCGAGGCAAGAA
GCCTGCTCGTCGCGCCTCGAGAGGGCAGCGGTGGGGACCGATATCTAGGGTTGTGATGGGAGAAGAAACTGAGGAGAGGC
CGAAAGCGGATGGGGCGAGGAGGTTGGTGTGGGAGGAAGAGGAGGAAGCGGACTGCAGAGGTGTTGCC

ORF - retro_zmay_60 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.46 %
Parental protein coverage: 68.82 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKVFRSQVISSNTHSSRQLPVEGEGGDDVARAHSTIGEAGGKALHAASNLRAGEASTDWAGS-DDDG-FDK
..F............RQ.PVEG.GG.DVARAHS.I.EA.GKALHA...L.AG.AS..WAGS.DD....DK
RetrocopyQTFMQLRLTKSMRAGRQVPVEGKGGSDVARAHSSIDEADGKALHAPAELHAGDASIAWAGSDDDGD>SDK
ParentalGCWAEAVRGKEPARRASRGQRRGPGSGVVMGEEIEERLEADGARRLVWEGEEEADCRGVA
GC.AEAVRGK.PARRASRGQR.GP.S.VVMGEE.EER..ADGARRLVWE.EEEADCRGVA
RetrocopyGCLAEAVRGKKPARRASRGQRWGPISRVVMGEETEERPKADGARRLVWEEEEEADCRGVA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Zea mays was not studied using RNA-Seq expression data.
Zea mays was not studied using ChIP-Seq data.
Zea mays was not studied using EST data.
Zea mays was not studied using FANTOM5 data.
retro_zmay_60 was not experimentally validated.

Retrocopy orthology:
Zea mays does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Zea mays GRMZM2G358405 3 retrocopies
retro_zmay_39, retro_zmay_59, retro_zmay_60 ,



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