>retro_zmay_60
CAGACGTTTATGCAGCTCCGACTAACGAAATCCATGCGTGCAGGTAGGCAGGTACCTGTTGAGGGCAAGGGTGGCAGCGA
TGTGGCTAGGGCGCACTCCTCGATCGATGAGGCCGATGGCAAGGCTCTGCACGCCCCCGCCGAACTTCACGCTGGTGATG
CGTCGATCGCCTGGGCCGGCAGCGACGACGACGGTGACAAGTGATAAGGGCTGCCTGGCTGAGGCGGTGCGAGGCAAGAA
GCCTGCTCGTCGCGCCTCGAGAGGGCAGCGGTGGGGACCGATATCTAGGGTTGTGATGGGAGAAGAAACTGAGGAGAGGC
CGAAAGCGGATGGGGCGAGGAGGTTGGTGTGGGAGGAAGAGGAGGAAGCGGACTGCAGAGGTGTTGCC
ORF - retro_zmay_60 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.46 % |
Parental protein coverage: |
68.82 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KVFRSQVISSNTHSSRQLPVEGEGGDDVARAHSTIGEAGGKALHAASNLRAGEASTDWAGS-DDDG-FDK |
| ..F............RQ.PVEG.GG.DVARAHS.I.EA.GKALHA...L.AG.AS..WAGS.DD....DK |
Retrocopy | QTFMQLRLTKSMRAGRQVPVEGKGGSDVARAHSSIDEADGKALHAPAELHAGDASIAWAGSDDDGD>SDK |
|
Parental | GCWAEAVRGKEPARRASRGQRRGPGSGVVMGEEIEERLEADGARRLVWEGEEEADCRGVA |
| GC.AEAVRGK.PARRASRGQR.GP.S.VVMGEE.EER..ADGARRLVWE.EEEADCRGVA |
Retrocopy | GCLAEAVRGKKPARRASRGQRWGPISRVVMGEETEERPKADGARRLVWEEEEEADCRGVA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Zea mays was not studied using RNA-Seq expression data.
Zea mays was not studied using ChIP-Seq data.
Zea mays was not studied using EST data.
Zea mays was not studied using FANTOM5 data.
retro_zmay_60 was not experimentally validated.
Retrocopy orthology:
Zea mays does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.