miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|11974717|gb|BF689309.1|BF689309 GGGAAAGCCTTCCTAAAGAGAGAGTATATACCGAGCGGTTGGATTAGGGCACTCCCTCTGGGTCCCTGGCAATTTCCTCC
AGGTTAGGGATCCCAAGGGGTCGCTGCCTTCCTGGGTCTCTGGCCTGGCCCTTGGGGCACACAGTCATCAAGAAGTGCTG
GGGGGAAGTGAGCTCTTTATTTAGACATAGCTCTGCTGAGTGGAAAGTGGGCACCAGCCCCATTAATGCTTGCTGGCTGG
TGGCTTCCAAGCACGCCCCACTGCCAAGGCTCAGCTCTGCAGTTCTGCCACTGCAGGTCCCTAGCACAGCCCCCAGGTCC
TTAAAAGTCATCATCATCACAGATGTCAAGGTACACGTCGAAAGCCTCTCTGTTGCAGTTTCCATCAGGAGTGAAGACAT
ATTTGTGGAAGGTCCCATCTACGCAGATGGCAATGACAGAGTTGACGTTCTTGGAAGTATTGCGACCGAAGGCGCAGATG
CAAGCTGACTCAGCAGGCACAGTGAAGCTCGCCAGGCTCCACTGAGAGTCCACGTACTGCCCAATCATAGGCCCCACCTT
GCCCACGCGAGCCAGCGCGGAGCGGCGGTTGAGGCGGGTATCCTTGAGAGCAAGATATGGACAGTACCCTTATCACTGGA
AGACGCAGAGGAAGGAGGAGTCGTGGCTGAAGTTATGCAGTAGAGGGTGGCCAGGGTCCGTGCCTCGGGCAGGCTCCACC
AGGTGTTTCCTTGGATTGTGTGTCACGGAGGCGAATTAAGGGTACCCTTCTGGGGAGGCTGAAAGGCACTACCGTGCCTG
GCACAAAGTGAGAATCCCACACTTGGTTTCCGGGACATAGCGATGCTTTCAGGTGGGCAAGTACAGGACCCTGGGTGTCC
CGGTAAATAACAGCTCGGATGTTGATCAAGGCACGATGTCCCGGAAGGCCAATTGCGCTCACGTGACCCGTTCTGACAGC
CGATTGTGCCGGCGATTTACCGGTGACGATAAACGGACAAGAGATATAGCGACTGAAACAATCGATTATATAGAGAGAAA
ATAACAAAC




Most similar to sp|Q91VM3|WIPI4_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q91VM3|WIPI4_MOUSE WD repeat_field domain phosphoinositide-interacting
           protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1
          Length = 360

 Score =  205 bits (521), Expect(2) = 1e-53
 Identities = 103/124 (83%), Positives = 105/124 (84%)
 Frame = -1

Query: 731 RKHLVEPARGTDPGHPLLHNFSHDSSFLCVFQ**GYCPYLALKDTRLNRRSALARVGKVG 552
           ++ LVE  RGTDP      NFSHDSSFLC     G     ALKDTRLNRRSALARVGKVG
Sbjct: 225 KEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVG 284

Query: 551 PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN 372
           PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN
Sbjct: 285 PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN 344

Query: 371 REAF 360
           REAF
Sbjct: 345 REAF 348



 Score = 26.9 bits (58), Expect(2) = 1e-53
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -3

Query: 801 PGTVVPFSLPRRVPLIRLRDTQSKE 727
           PGTVV  S  ++  LIRL DTQSKE
Sbjct: 203 PGTVVA-SASQKGTLIRLFDTQSKE 226


>sp|Q9Y484|WIPI4_HUMAN WD repeat_field domain phosphoinositide-interacting
           protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1
          Length = 360

 Score =  205 bits (521), Expect(2) = 1e-53
 Identities = 103/124 (83%), Positives = 105/124 (84%)
 Frame = -1

Query: 731 RKHLVEPARGTDPGHPLLHNFSHDSSFLCVFQ**GYCPYLALKDTRLNRRSALARVGKVG 552
           ++ LVE  RGTDP      NFSHDSSFLC     G     ALKDTRLNRRSALARVGKVG
Sbjct: 225 KEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVG 284

Query: 551 PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN 372
           PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN
Sbjct: 285 PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN 344

Query: 371 REAF 360
           REAF
Sbjct: 345 REAF 348



 Score = 26.9 bits (58), Expect(2) = 1e-53
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -3

Query: 801 PGTVVPFSLPRRVPLIRLRDTQSKE 727
           PGTVV  S  ++  LIRL DTQSKE
Sbjct: 203 PGTVVA-SASQKGTLIRLFDTQSKE 226


>sp|Q5U2Y0|WIPI4_RAT WD repeat_field domain phosphoinositide-interacting
          Length = 309

 Score =  205 bits (521), Expect = 5e-52
 Identities = 103/124 (83%), Positives = 105/124 (84%)
 Frame = -1

Query: 731 RKHLVEPARGTDPGHPLLHNFSHDSSFLCVFQ**GYCPYLALKDTRLNRRSALARVGKVG 552
           ++ LVE  RGTDP      NFSHDSSFLC     G     ALKDTRLNRRSALARVGKVG
Sbjct: 174 KEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVG 233

Query: 551 PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN 372
           PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN
Sbjct: 234 PMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCN 293

Query: 371 REAF 360
           REAF
Sbjct: 294 REAF 297