miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|154181870|gb|EV551210.1|EV551210 GGATTGTCTTATTTACTCTCGCCCCCCTTTCCCTCGAAACAAAAATTAGGGTTAACGAATTCGGAACCAGCATCCATGGA
AGAGATCACAGAGGGAGTGAACAACATGAACTTGGCCAATGATTCCCAGAAGAAGAACCGGATTCAGGTTTCCAACACTA
AGAAACCATTGTTCTTCTACGTCAACCTCGCCAAGAGGTATATGCAAGAGCACAATGATGTCGAATTGTCTGCCCTTGGG
ATGGCCATTGCAACCGTTGTTACCATTGCTGAGATACTCAAGAACAATGGTTTTGTTGTTGAGAAGAAGATCATGACTTC
TACTGTGGATATTAAGGATGGCTCAAGGGGACGTCCTGTGCAGAAACCTAAGATCGAAATCACGCTTGGGAAGTCAGAGA
AGTTTGATGAACTAATGGCTGCAGCCAATGAAGAAAAAGAAGCTGCAGAAGCTCAGGTCCAGAGCTGAGCATAGCCTTCT
TATGTTATGTTTCATTTCATGGGTCTTTCTCCTGCTTGATGCTTAATATTATTTGTTTAATTTCATTGATTTTTGGCTGA
ATTTGAGTTGTTATGTTTTGGATGGTTTGTTGTACCTGTTGAAACACTTTTACAATTATGAT




Most similar to sp|O22969|Y2416_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160
           OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
          Length = 130

 Score =  204 bits (518), Expect = 5e-52
 Identities = 106/130 (81%), Positives = 112/130 (86%)
 Frame = +1

Query: 76  MEEITEGVNNMNLANDSQKKNRIQVSNTKKPLFFYVNLAKRYMQEHNDVELSALGMAIAT 255
           MEEIT+GVNNMNLA DSQKKNRIQVSNTKKPLFFYVNLAKRYMQ++NDVELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 256 VVTIAEILKNNGFVVEKKIMTSTVDIKDGSRGRPVQKPKIEITLGKSEKFDELMXXXXXX 435
           VVT+ EILKNNGF VEKKIMTSTVDIKD +RGRPVQK KIEITL KSEKFDELM      
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 436 XXXXXXQVQS 465
                 QVQ+
Sbjct: 121 KEDAEAQVQN 130