miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|157882266|gb|EX486581.1|EX486581 CGACACGTCGGGTGCCGGTGTGGCATCTATGTTGGAGTGTGCCTATGCTGGTGCTGATGCTGTTGATGTGGCTGTTGATT
CCATGTCTGGGATGACTTCCCAGCCCTCCATGGGTGCTGTTGTTGCCAGTTTGATGGGGCATGAGCTGGACACTGGCATG
GATTTGGATAAAATCAGCAAATATTCTGCTTTCTGGGAACAGACCCGCACACTCTATGCACCATTTGAGTGTGCAGTGAC
TATGAAATCAGGCAATGCAGATGTTTATCAGAATGAAATCCCCGGTGGGCAGTATACCAATCTTCAGTTCCAGGCATTCT
CCTTAGGGCTGGGAGATCAGTTTGAGGCAGTGAAGAAGGCATACAGAGAAGCAAATCTTCTCCTAGGTGATTTAATTAAG
GTAACTCCATCATCAAAAGTGGTGGGCGATCTGGCTCAGTTCATGGTGCAGAACAAGCTCTCCGCTGCTGACGTTGAGAA
TGGAGCAGAGAATCTTAGCCTCCCAAAGTCTGTGATTGAGTTTATCCAAGGATACTTAGGTGAACCTTATGGGGGATTCC
CAGAACCATTACGCACTAGGATGCTAAAGGGACTGCCAATTGTCAAGGGGCGCCCAGGAGCTACAATGACTCCCATGAAC
TTCGCTGACATCAAGTCTGATCTTGT




Most similar to sp|O17732|PYC1_CAEEL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O17732|PYC1_CAEEL Pyruvate carboxylase 1 OS=Caenorhabditis elegans
            GN=pyc-1 PE=1 SV=1
          Length = 1175

 Score =  303 bits (776), Expect = 7e-82
 Identities = 150/221 (67%), Positives = 179/221 (80%)
 Frame = +2

Query: 2    DTSGAGVASMLECAYAGXXXXXXXXXSMSGMTSQPSMGAVVASLMGHELDTGMDLDKISK 181
            DTSGAGVA+MLECA AG         SMSGMTSQPSMGA+VASL G + DTG+ LD ISK
Sbjct: 770  DTSGAGVAAMLECAKAGADVVDAAVDSMSGMTSQPSMGAIVASLQGTKHDTGLSLDDISK 829

Query: 182  YSAFWEQTRTLYAPFECAVTMKSGNADVYQNEIPGGQYTNLQFQAFSLGLGDQFEAVKKA 361
            YSA+WE TR LYAPFECA TMKSGNADVY++EIPGGQYTNLQFQAFSLGLG QF+ VK+ 
Sbjct: 830  YSAYWESTRQLYAPFECATTMKSGNADVYKHEIPGGQYTNLQFQAFSLGLGPQFDEVKRM 889

Query: 362  YREANLLLGDLIKVTPSSKVVGDLAQFMVQNKLSAADVENGAENLSLPKSVIEFIQGYLG 541
            YREANL+LGD+IKVTPSSK+VGDLAQFMVQN L+   + + A++LS PKSV++F+QG +G
Sbjct: 890  YREANLVLGDIIKVTPSSKIVGDLAQFMVQNNLTRETLVDRADDLSFPKSVVDFMQGNVG 949

Query: 542  EPYGGFPEPLRTRMLKGLPIVKGRPGATMTPMNFADIKSDL 664
            +P  GFPEPLRT++L+G P V GRPG    P++   +K +L
Sbjct: 950  QPPYGFPEPLRTKVLRGKPKVDGRPGENAKPVDLDAVKVEL 990