miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|189258224|gb|FM007073.1|FM007073 AATTAACACACAACAGGCGACAGTCGGATGAAGTCATGCAGAGGGGTCTCCAGCTGGGCCTGGTGCTTCTGGCGGTCCAG
CTGTTCCAGGAGGGTCTGGGCAACATCCCAGCAGTCACTCTGGCCGTCCTGGGATTCAATGTGTATCTTTACATGTTCCC
TGCTGCTCCTCTGATGAAGGCCTGTGTGAACCTCCAGTACGTGTACAGGTCTAAAGAGTGGCGTCGCCTCTTCCTGTCCC
CCCTGCACCACGTGGATGATTGGCACCTGTACTTCAACATGGTGTCCTTCGTGTGGAAAGGCCTCCGGCTGGAGCGCCGG
CTGGGTGGAGCCTGGTTCCTCTACCTGCTGTCGGTCTTCTCTCTGCTCACCGGGCTCGTCTACCTGCTGCTGCAGGCGGG
ACTCACAGAACTCACCCAGAACCCTGATCTGTTCCCAGAGGTCATCGACTTCTTACCTCACGGCAATGAGTGCGCTGTCG
GCTTCTCAGGTGTCCTGTTCGCTCTGAAGGTGATCTGCAACCATTACAACCCCGGTGGAGTGACCTATGTGTTGAATATT
TGTGTGCCCAACTACATTGCCAGCTGGGTGGAGCTCGTGCTGATCTATCTGATCGCTCCCGGGACCTCTTTGATTGGCCA
CCTGGCGGGCATCCTGGTGGGTCTGCTCTACACTGTANGTCCACTGGAGACCATCATGAAGACATGTGCAGAGTTTGTGT
CTTCTGATGGATATAATCCACGGGCAAGTTCATACTTCAGCTCCTCAGGCTA




Most similar to sp|Q8TEB9|RHBD1_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8TEB9|RHBD1_HUMAN Rhomboid domain-containing protein 1 OS=Homo
           sapiens GN=RHBDD1 PE=2 SV=1
          Length = 315

 Score =  257 bits (656), Expect = 7e-68
 Identities = 127/230 (55%), Positives = 156/230 (67%), Gaps = 1/230 (0%)
 Frame = +3

Query: 84  FQEGLGNIPAVTLAVLGFNVYLYMFPAAPLMKACVNLQYVYRSKEWRRLFLSPLHHVDDW 263
           F  G+ NIP VTLA L  N++ ++ P  PL  +C++++  Y+ K+W+RL LSPLHH DDW
Sbjct: 20  FHVGINNIPPVTLATLALNIWFFLNPQKPLYSSCLSVEKCYQQKDWQRLLLSPLHHADDW 79

Query: 264 HLYFNMVSFVWKGLRLERRLGGAWFLYLLSVFSLLTGLVYLLLQAGLTELTQNPDLFPEV 443
           HLYFNM S +WKG+ LERRLG  WF Y+++ FS+LTG+VYLLLQ  + E    PD     
Sbjct: 80  HLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDF---- 135

Query: 444 IDFLPHGNECAVGFSGVLFALKVICNHYNPGGVTYVLNICVPNYIASWVELVLIYLIAPG 623
                    CAVGFSGVLFALKV+ NHY PGG   +L   VPN  A WVELV I+L +PG
Sbjct: 136 ------KRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPG 189

Query: 624 TSLIGHLAGILVGLLYTVXPLETIMKTCA-EFVSSDGYNPRASSYFSSSG 770
           TS  GHLAGILVGL+YT  PL+ IM+ CA  F SS GY P    YF+SSG
Sbjct: 190 TSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGY-PGRQYYFNSSG 238