miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|259080283|gb|GH302723.1|GH302723 GCACAGGCTTCCTTAAGGAAAAAAATAATTCTTTTGGACTCAATATTGTCTTGAATTATTTTTGTTAAAATATTGTTTAA
TGCATAAAACTGTGTTAATGCAAATGTATATACTTCTTAGTCCTATAAAATTATAAAGCCCAATAAAATTATAAAAGTTA
CACAGTAATTAAAATGTAAAAGACTTTAAAAAAAAAAAAAAAAAACTCGAGGCGAGCAGGGAGTGGAGCCGCAGGGACGC
ACAGGGTCGCGTTGGGCCAGCAGGCTGGAGGGGAACCCAGGTTACATCCAGGCGTGTAGAGGACTTATGATTGCCGCTGT
CAGCCTGGGCTTTTTCGGTTCCATATTCGCCCTGATTGGCATGAAATGTACCAAAGTCGGAGGCTCAGATAAAGCCAAAG
CTAAAATTGCGTGTTTGGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCAATGACTGGGTGTTCCCTGTATGCAAAC
AAAATCACAACAGAATTCTTTGATCCCCTCTTCGTGGAGCAAAAGTATGAGTTAGGAGCTGCTCTGTTTATTGGATGGGC
AGGAGCCTCACTCTGCCTAATTGGTGGTGTCATATTTTGCTTTTCAATATCTGACAACAACAAAGCACCC




Most similar to sp|Q5E9L0|CLD10_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9C809|B3GT8_ARATH Probable beta-1,3-galactosyltransferase 8
           OS=Arabidopsis thaliana GN=B3GALT8 PE=2 SV=1
          Length = 395

 Score =  117 bits (293), Expect(2) = 3e-32
 Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
 Frame = +3

Query: 372 QKLVEDNSGDIMGEVTKTHQAIQSLDKTISTLEMELEVARVSLLGPKFISERMEASNKTS 551
           +KL+E  S DI+GEV++THQA++SL++T+STLEMEL  AR S    +F SER  A N++ 
Sbjct: 62  RKLIESKSRDIIGEVSRTHQAVKSLERTMSTLEMELAAARTSDRSSEFWSER-SAKNQSR 120

Query: 552 LQKAFVVIGINTAFSSKKRRDSLRETWMPTGSPFIHITLPK-FVFYYSVYHS 704
           LQK F VIGINTAFSSKKRRDS+R+TWMPTG     I   K  V  + + HS
Sbjct: 121 LQKVFAVIGINTAFSSKKRRDSVRQTWMPTGEKLKKIEKEKGIVVRFVIGHS 172



 Score = 42.7 bits (99), Expect(2) = 3e-32
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 181 MRGKSVPGKITLTLCIASFLAGTLFTRNTW--PYAPILNEVHFKNHEQKMSLLSSKECDR 354
           MR K+  GK  + LC+ASFLAG+LF   T    Y P   + H   H  K  L   K+CD 
Sbjct: 1   MRAKAASGKAIIVLCLASFLAGSLFMSRTLSRSYIPEEEDHHLTKHLSK-HLEIQKDCDE 59

Query: 355 KR 360
            +
Sbjct: 60  HK 61


>sp|Q9ZV71|B3GT3_ARATH Probable beta-1,3-galactosyltransferase 3
           OS=Arabidopsis thaliana GN=B3GALT3 PE=2 SV=1
          Length = 409

 Score = 94.7 bits (234), Expect(2) = 4e-21
 Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
 Frame = +3

Query: 363 SFYQKLVEDNSGDIMGEVTKTHQAIQSLDKTISTLEMELEVARV---SLLGPKFISERME 533
           + YQK V  +   + GEV+KTH AIQ+LDKTIS+LEMEL  AR    SL+    IS  ME
Sbjct: 71  TLYQKEVNRDPQALFGEVSKTHNAIQTLDKTISSLEMELAAARSAQESLVNGAPISNDME 130

Query: 534 ASNKTSLQKAFVVIGINTAFSSKKRRDSLRETWMPTG 644
                  ++  +V+GINTAFSS+KRRDS+R TWMP+G
Sbjct: 131 KKQLPGKRRYLMVVGINTAFSSRKRRDSVRTTWMPSG 167



 Score = 28.1 bits (61), Expect(2) = 4e-21
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
 Frame = +1

Query: 178 KMRGKSVPG------KITLTLCIASFLAGTLFTRNTW--PYAPILNEVHFKNHEQKMSLL 333
           K++G+  P       K T  LC  SF  G LFT   W  P +  +         +++ L+
Sbjct: 4   KIKGELFPSRSLVSKKWTFLLCFGSFCFGILFTDRMWIIPESKDMPRPSVSTEAERLKLI 63

Query: 334 SSKECDRK 357
            S+ CD K
Sbjct: 64  -SEGCDPK 70


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5E9L0|CLD10_BOVIN Claudin-10 OS=Bos taurus GN=CLDN10 PE=2 SV=1
          Length = 231

 Score =  238 bits (608), Expect = 2e-62
 Identities = 117/117 (100%), Positives = 117/117 (100%)
 Frame = +1

Query: 280 GYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMT 459
           GYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMT
Sbjct: 74  GYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMT 133

Query: 460 GCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCLIGGVIFCFSISDNNKAP 630
           GCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCLIGGVIFCFSISDNNKAP
Sbjct: 134 GCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCLIGGVIFCFSISDNNKAP 190