miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|42728486|gb|CK774343.1|CK774343 AGGACCGAGACAGCTGCTTCTGTGCGCTGTGCGGGGCATGGGCCCCCGCGGCGTGGGGACACCAGGCTAAAGCCTGCATC
AGAACGTGCTGGTGGACGTTGTCAGGCGCCTTCCGATGTAGATCCCCAGCCCGATGGCCAGCAGGTGGGACAGCAGCAGC
GACGGCAGGAAGACCTTGAGGAACTCCGCAGAGAAGATGCCGCCCTTCTTCATGACGCTCGTGTTGCGCATGCTGAGCGT
GGGCGTGCGCTTTGGGTGCTTGAAGAGCAGGAATTCCTTGGCCGGGGGGACGTTCTCTGGCCGACTGGACCAATCCCAAA
TCCAGTCTGAGTTTTTCTTCAGGATGCTTTCAACCTCTTTCCTCCTCTCCATGTAGTCTTCCTCGGACTGGGAGCTGTTC
TTCTCTCCGAGGCTGTGCGTGTCTGTCTCAGAAGCTCTGTTAGTGTCCTGTGGGGTCTGTGAGCGGGGCGGGCTGTCGCA
GTGGGAGCTCTTGGAGCTGCTCCGTCCGGATTCGTGCTGCGCGTCCAGCAGTATCTTTTCCATGTCGCCGTTATAAATAG
AAACAGAGTCGGGAACACTGCTCCCATTTCCATTACTGCCGAAGTGTAATTCTACCCAGGAGCCGTGCAGGCTCTCCTCC
TGCAGCCCGGGGCTCTCGCTCTGCGACATGATGGCGGGGCTAGGGTGCCGCGGCCGGCGGGTCGGGGTCTGCGGGCGCGC
CAAGGGAGCGCAGGGGCCGGAGAACCTTGGGCGGCGGACGAAACGTCGTCGGCCCGC




Most similar to sp|Q32KN2|BNIP3_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q32KN2|BNIP3_BOVIN BCL2/adenovirus E1B 19 kDa
           protein-interacting protein 3 OS=Bos taurus GN=BNIP3
           PE=2 SV=1
          Length = 196

 Score =  315 bits (806), Expect = 3e-85
 Identities = 162/196 (82%), Positives = 162/196 (82%)
 Frame = -1

Query: 669 MSQSESPGLQEESLHGSWVELHFGSNGNGSSVPDSVSIYNGDMEKILLDAQHEXXXXXXX 490
           MSQSESPGLQEESLHGSWVELHFGSNGNGSSVPDSVSIY GDMEKILLDAQHE       
Sbjct: 1   MSQSESPGLQEESLHGSWVELHFGSNGNGSSVPDSVSIYKGDMEKILLDAQHESGRSSSK 60

Query: 489 XXXXXXXXXSQTPQDTNRASETDTHSLGEKNSSQSEEDYMERRKEVESILKKNSDWIWDW 310
                    SQTPQDTNRASETDTHSLGEKNSSQSEEDYMERRKEVESILKKNSDWIWDW
Sbjct: 61  SSHCDSPPRSQTPQDTNRASETDTHSLGEKNSSQSEEDYMERRKEVESILKKNSDWIWDW 120

Query: 309 SSRPENVPPAKEFLLFKHPKRTPTLSMRNTSVMKKGGIFSAEFXXXXXXXXXXXXXXXXX 130
           SSRPENVPPAKEFLLFKHPKRTPTLSMRNTSVMKKGGIFSAEF                 
Sbjct: 121 SSRPENVPPAKEFLLFKHPKRTPTLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIG 180

Query: 129 LGIYIGRRLTTSTSTF 82
           LGIYIGRRLTTSTSTF
Sbjct: 181 LGIYIGRRLTTSTSTF 196