miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48748358|gb|CO078877.1|CO078877 AGAGATATAATTGAAAGAAAAGAAAACTGGTTCTGCTAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCAACCGGAA
CGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAAAGATGAGGCTTCATCAATGGCGATGCC
GACGAGTCCGACGACACCTGGGACACCATCGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTGTTCAATC
CAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGTTTATGAC
TGGTTCGTACAGATTTTTTTTTCTTGTTCAGTTATTTGCATGCATGCTTGCTTGGATAATTGGATATATATAAGTGGGAC
TTTGATTTTGCTTTTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCGTATATAA
ATATTAACCAGGTGTTTTGGAATTTGGATTCTTTTTAATATATAGTACTAAAATGATGAATTTTTCAAAAAGGAAGCCTC
AAAAACTTTCCTGTTTGTGTGTGTTTTTTTTTTCTAACGTTTTCTCAGCAACCAAACGGAGGCTCAGAGACAGATCATGC
AGGAAAACTTGGCTCTTTGTTTGGTAGCTGCGTGGAAATAACAGTATGCTGTAATTATTACACTAATCCATTTATAAGCT
TTTATTTTTAATTATTCTTGTTTATTTACTATAAGATGATAAATAACCAAAGATTAATTAGGGTAATTTGCATGGATCTA
ATTTCTGGGTGTTAACTAAAATTTAAGAAGAAAGTTTGGTTCGGATGGGATGGGATG




Most similar to sp|Q05349|12KD_FRAAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria
           ananassa PE=2 SV=1
          Length = 111

 Score =  103 bits (257), Expect = 2e-21
 Identities = 49/92 (53%), Positives = 58/92 (63%)
 Frame = +3

Query: 48  WDDVVAGPQPERGLGRLRKITTTPPLSTKDEXXXXXXXXXXXXXXXXXXXXXXRRDNVWR 227
           WDD+VAGPQPERGLG LRK+     L  + E                      R+DNVWR
Sbjct: 8   WDDIVAGPQPERGLGMLRKVPQPLNLKDEGESSKITMPTTPTTPVTPTTPISARKDNVWR 67

Query: 228 SVFNPGSNLATKGIGAEVFDKPQPNSPTVYDW 323
           SVF+PGSNL++K +G +VFD PQPNSPTVYDW
Sbjct: 68  SVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDW 99