miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74106132|gb|DT594859.1|DT594859 GGAGAAGAGGGAAAAAAGTAGTGGAACATTTATTTATTCTCTCGTCTTCTTCCTCTTCCTCTTCTCTCCATAATTTCAAT
CTCCTAGCTTGCCTCATTTGCTCCTCCGGCCGATAAACCCCGACGTTCTTGCCTTCGCCGTCGCCGATCCGCCTCAGGAA
ACCCTTTGCTCCTCCGGCCGATTGACGCCGCTCCAGCCACAGCCCCTTTGCTTCTCGTCCGAGGCGCTTCAGAAACTGCA
ACCATGAGTACCATGAAGTTTTGCCGTGAATGCAACAACATTTTGTACCCAAAAGAGGACAAGGAACAAAAGGTCCTCCT
CTATGCTTGTCGCAACTGTGATCATCAGGAGGTTGCTGAGAACAACTGTGTATATAGAAATGAGATACATCACTCGGTTG
GTGAGCGCACCCAAATCTTACAGGATGTAGCTGCTGATCCGACCCTTCCTCGTACTAAAACTGTTAGATGCACTCTATGC
AACCACGGAGAAGCTGTATTCTTCCAGGCGGCCGCGAGGGGCGAGGAGGGTATGACCCTGTTCTTCGTTTGCTGCAACCC
TAACTGTGGTTATAGATGGAGAGATTGATGTAACCAGAGGAATGAGCTCCTGGAGATTTGCTTGCTGACTTATAGAAATG
TTTTGGGTGCTCCTTGTTATAAACAGGTTCCATCAGTAGCTTAAAGGTTTGCTTACTGAGATCTTACAATGCCTGCTTTC
AGCTTGTTGTTTCACTTTTTACTTGTTCAACAAAGCTGATGTTTGCTGTGAACATGGTTGGGTGGAGTTTGATCAAAGTA
TGATTCACTCTTCAAAAAAAAAAAAAAAA




Most similar to sp|P60899|RPB9_PIG

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P60899|RPB9_PIG DNA-directed RNA polymerase II subunit RPB9
           OS=Sus scrofa GN=POLR2I PE=3 SV=1
          Length = 125

 Score =  154 bits (390), Expect = 6e-37
 Identities = 66/112 (58%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +1

Query: 253 MKFCRECNNILYPKEDKEQKVLLYACRNCDHQEVAENNCVYRNEIHHSVGERTQILQDVA 432
           ++FC+ECNN+LYPKEDKE ++LLYACRNCD+Q+ A+N+C+Y N+I H V E TQI+ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 433 ADPTLPRTKTVRCTLCNHGEAVFFQA-AARGEEGMTLFFVCCNPNCGYRWRD 585
            DPTLPRT+   C  C H EAVFFQ+ +AR E+ M L++VC  P+CG+RW +
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125