miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 79.8 bits (40), Expect = 6e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
|||||||| ||||||||| ||||| ||||||||| ||| ||||| |||||||||||
Sbjct: 22 gggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctacccat 81
Query: 77 gcactgcctcttccctggct 96
||||||||||||||||||||
Sbjct: 82 gcactgcctcttccctggct 101
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 58 ctgtttctgctctacccatgcactgcctcttccctggctct 98
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggctct 110
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 ctctacccatgcactgcctcttccctggctc 97
|||||||||||||||||||||||||||||||
Sbjct: 79 ctctacccatgcactgcctcttccctggctc 109
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 68 tctacccatgcactgcctcttccctggctctctc 101
||||||| ||||||||||||||||||||||||||
Sbjct: 78 tctacccctgcactgcctcttccctggctctctc 111
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 gctctacccatgcactgcctcttccctggct 96
||||||||| |||||||||||||||||||||
Sbjct: 72 gctctacccctgcactgcctcttccctggct 102
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 66 gctctacccatgcactgcctcttccctggc 95
||||||| ||||||||||||||||||||||
Sbjct: 89 gctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 catgcactgcctcttccctggctct 98
|||||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggctct 141
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 catgcactgcctcttccctggct 96
|||||||||||||||||||||||
Sbjct: 83 catgcactgcctcttccctggct 105
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctc 166
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
