miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 tgcattcctgggcaattcttgctttggcagttgg 47
|||||| |||||||||||||||||||||||||||
Sbjct: 4 tgcattactgggcaattcttgctttggcagttgg 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 72 aagagtaggcct-actaccaaagaagatttgccccacaattca 113
||||||| |||| ||| |||||||||||||||||| |||||||
Sbjct: 72 aagagtaagcctcactgccaaagaagatttgccccgcaattca 114
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 ccaaagaagatttgccccacaattca 113
|||||||||||||||||| |||||||
Sbjct: 87 ccaaagaagatttgccccgcaattca 112
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 ccaaagaagatttgccccacaattca 113
|||||||||||||||||| |||||||
Sbjct: 75 ccaaagaagatttgccccgcaattca 100
