miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 119 bits (60), Expect = 1e-26
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 29 cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagca-ca 87
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 88 aacacatgaatcgatcgataaacctctgcatccagc 123
||| ||||||||||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 95.6 bits (48), Expect = 2e-19
Identities = 86/95 (90%), Gaps = 4/95 (4%)
Strand = Plus / Plus
Query: 29 cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaa 88
||||||||||||||||||||||||||||||||| ||| |||| ||||||| | ||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg--ggaatttggtgtgaaa-aatcacag 57
Query: 89 acacatgaatcgatcgataaacctctgcatccagc 123
| |||||||||||||||||||||||||||||||||
Sbjct: 58 a-acatgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 85.7 bits (43), Expect = 2e-16
Identities = 85/96 (88%), Gaps = 6/96 (6%)
Strand = Plus / Plus
Query: 29 cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-a 87
|||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacga 55
Query: 88 aacacatgaatcgatcgataaacctctgcatccagc 123
|| ||||||| |||||||||||||||||||||||||
Sbjct: 56 aaaacatgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 31 ctggaggcagcggttcatcgatctcttcctg 61
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 92 catgaatcgatcgataaacctctgcatccagc 123
||||||| ||||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 60.0 bits (30), Expect = 9e-09
Identities = 81/95 (85%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 29 cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaa 88
|||||||||||||||||||||||||| ||||| || |||||| |||| || ||| |
Sbjct: 1 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----tttacacga 55
Query: 89 ac-acatgaatcgatcgataaacctctgcatccag 122
|| ||| ||| ||||||||||||||||||||||||
Sbjct: 56 acaacacgaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 gaatcgatcgataaacctctgcatccagc 123
|||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ctggaggcagcggttcatcgatc 53
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 91 acatgaatcgatcgataaacctctgcatccagc 123
|||||||||| ||||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccagc 90
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
||||||| |||||||||||||||||| ||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctg 33
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 29 cactggaggcagcggttcatcgatctcttcctg 61
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 gaatcgatcgataaacctctgcatccagc 123
|||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 gaatcgatcgataaacctctgcatccag 122
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 gaatcgatcgataaacctctgcatccag 122
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 95 gaatcgatcgataaacctctgcatccagc 123
|||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 gaatcgatcgataaacctctgcatccag 122
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 31 ctggaggcagcggttcatcgatctctt 57
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
