miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 123 bits (62), Expect = 2e-27
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 224 ggttttcgggccataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgc 283
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ggttttcgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgc 114
Query: 284 tgcctccctttgcc 297
||||||||||||||
Sbjct: 115 tgcctccctttgcc 128
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 28 ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
|||||| ||||||| ||| |||||||||||||| |||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaa 79
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 123 bits (62), Expect = 2e-27
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 232 ggccataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccc 291
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63 ggccataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccc 122
Query: 292 tttgcc 297
||||||
Sbjct: 123 tttgcc 128
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 244 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 290
|||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54 gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
Score = 52.0 bits (26), Expect = 5e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 21 tgcaagtggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
||||||||||||||||||||| ||| || |||||||| | |||||||||
Sbjct: 1 tgcaagtggaggcggcaagctagagacagcaactgcatatcttgcaagaa 50
Score = 46.1 bits (23), Expect = 3e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 28 ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
|||||| ||||||| ||| ||||||||||||| |||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaa 79
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 121 bits (61), Expect = 6e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 237 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
Query: 297 c 297
|
Sbjct: 130 c 130
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 28 ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
|||||| ||||||| ||| |||||||||||||| |||||||||
Sbjct: 123 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaa 81
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 93.7 bits (47), Expect = 1e-18
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 247 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 297
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
Score = 61.9 bits (31), Expect = 5e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 28 ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
|||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 160 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaa 118
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 81.8 bits (41), Expect = 6e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 242 atgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 290
|||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 110 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 61.9 bits (31), Expect = 5e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 28 ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
|||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 158 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaa 116
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 79.8 bits (40), Expect = 2e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 235 cataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 290
|||||||||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 28 ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaatatc 74
|||||| ||||||| |||||| |||||||| || |||||||||||||
Sbjct: 122 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaatatc 76
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 77.8 bits (39), Expect = 9e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 247 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 297
|||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 1e-12
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 247 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 287
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 35 gcaagctcgaggcaacaactgcacaatttgcaagaa 70
||||||| |||||||||||||||||| |||||||||
Sbjct: 225 gcaagcttgaggcaacaactgcacaacttgcaagaa 190
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 69.9 bits (35), Expect = 2e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 235 cataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcccttt 294
|||||||||| | ||||||||||| |||||||| || ||||||||| ||||||||||||
Sbjct: 67 cataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctcccttt 126
Query: 295 gcc 297
|||
Sbjct: 127 gcc 129
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 261 tgcagttgttgtctcaagcttgctgcc 287
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 3e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 253 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 297
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
