miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 99.6 bits (50), Expect = 1e-20
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||
Sbjct: 10 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 69
Query: 61 gatcccacag 70
||||||||||
Sbjct: 70 gatcccacag 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 146 atccttctttggattgaagggagctcta 173
|||||| |||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctcta 182
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 91.7 bits (46), Expect = 3e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| |||| ||||||||||| |||||||||||| | ||||
Sbjct: 10 gtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatg 69
Query: 61 gatcccacag 70
||||||||||
Sbjct: 70 gatcccacag 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 146 atccttctttggattgaagggagctcta 173
|||||| |||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctcta 182
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 81.8 bits (41), Expect = 3e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Query: 61 gatcc 65
|||||
Sbjct: 70 gatcc 74
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 69.9 bits (35), Expect = 1e-11
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
||||||||||||||||||| |||||| || | |||| ||||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 64 cccacag 70
||||||
Sbjct: 73 tccacag 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 146 atccttctttggattgaagggagctcta 173
|||||| |||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctcta 182
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
||||||||||||||||||| || | || | |||||| ||| |||||||| ||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 64 cccacag 70
|||||||
Sbjct: 61 cccacag 67
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 54.0 bits (27), Expect = 7e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
||||||||||||||||||||| || ||||| || || | |||||||||||| | |||||
Sbjct: 10 gtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatg 69
Query: 61 gat 63
|||
Sbjct: 70 gat 72
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 149 cttctttggattgaagggagctcta 173
|||||||||||||||||||||||||
Sbjct: 168 cttctttggattgaagggagctcta 192
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 149 cttctttggattgaagggagctct 172
||||||||||||||||||||||||
Sbjct: 172 cttctttggattgaagggagctct 195
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
