miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 281 bits (142), Expect = 2e-75
Identities = 170/181 (93%), Gaps = 2/181 (1%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 60
Query: 68 cagatggctcgacatgactggttgttgtggaaaaagaaaaggaaggaaataggnnnnnnn 127
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 cagatggctcgacatgactggttgttgtggaaaaagaaaaggaaggaaacagg--aaaaa 118
Query: 128 nnncaaagaatagcgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaacaaagaatagcgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 178
Query: 188 g 188
|
Sbjct: 179 g 179
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 129 bits (65), Expect = 2e-29
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 67
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 60
Query: 68 cagatggct 76
|||||||||
Sbjct: 61 cagatggct 69
Score = 85.7 bits (43), Expect = 2e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 142 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaag 188
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 155
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 142 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 120
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 gcggtctctgattcgcttggtgcaggtcgggaac 47
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 89.7 bits (45), Expect = 1e-17
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 139 agcgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27 agcgaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 75
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 89.7 bits (45), Expect = 1e-17
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 45
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 tcccgccttgcatcaactgaatc 172
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcagattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45
Score = 73.8 bits (37), Expect = 8e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 147 ggatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggccgaggtgaa 135
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 150 tcccgccttgcatcaactgaatcggaggccgcggtgaa 187
||||| |||| |||||||||||||||| ||| ||||||
Sbjct: 88 tcccgtcttgtatcaactgaatcggagtccgaggtgaa 125
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 142 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaag 188
|||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 73.8 bits (37), Expect = 8e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtttcggattcgcttggtgcaggtcgggaactgatt 45
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 154 gccttgcatcaactgaatcggaggccgcggtgaa 187
||||||||||||||||||||||| ||| ||||||
Sbjct: 92 gccttgcatcaactgaatcggagtccgaggtgaa 125
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 142 gaattggatcccgccttgcatcaactgaatcgga 175
||||||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatcgga 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaact 48
||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcggag 176
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 10 accggcggtctctgattcgcttggtgcaggtcgggaact 48
|||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcggag 176
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 10 accggcggtctctgattcgcttggtgcaggtcgggaactgatt 52
|||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcggag 176
|||||||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatcggag 126
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 10 accggcggtctctgattcgcttggtgcaggtcgggaac 47
|||| ||| ||| |||||||||||||||||||||||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcggag 176
|||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcggag 123
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaac 47
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 16 ggtctctgattcgcttggtgcaggtcgggaactgatt 52
|||||| ||||||||||||||||||||||||||||||
Sbjct: 9 ggtctcagattcgcttggtgcaggtcgggaactgatt 45
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 148 gatcccgccttgcatcaactgaatc 172
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 63.9 bits (32), Expect = 8e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcgga 175
||||||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatcgga 128
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaactgattcggc 56
||||||||||||||||||||||||| |||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaaccaattcggc 49
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaactgattc 53
|||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattc 46
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 150 tcccgccttgcatcaactgaatcgga 175
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 148 gatcccgccttgcatcaactgaatcggaggccgcggtga 186
||||||||||||||||||||||||||||| | |||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagacggcggtga 145
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 ggtctctgattcgcttggtgcaggtcgggaac 47
||||||| ||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaactgatt 52
||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 150 tcccgccttgcatcaactgaatcggag 176
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcggag 176
||||| |||||||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatcggag 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 accggcggtctctgattcgcttggtgcaggtcggga 45
|||| ||| ||| |||||||||||||||||||||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 144 attggatcccgccttgcatcaactgaatcggag 176
|||||||||||||||||||||| ||||||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatcggag 123
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaac 47
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 19 ctctgattcgcttggtgcaggtcgggaac 47
|||||||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 143 aattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 187
|||||||||| |||||||||||| ||||||||||| || |||||
Sbjct: 67 aattggatcctgccttgcatcaatcgaatcggaggctgcagtgaa 111
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 147 ggatcccgccttgcatcaactgaatcggag 176
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
