miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 137 bits (69), Expect = 5e-32
Identities = 103/113 (91%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 28 aaagagggggccagggaagaggcagtgcatgggaagagaccaaacatagtcatttgatgt 87
|||||||| |||||||||||||||||||||||| |||||| ||| | |||| ||| ||||
Sbjct: 116 aaagagggagccagggaagaggcagtgcatgggtagagacaaaaaagagtcgtttaatgt 57
Query: 88 tttggtaaaactcaatccatgctctgcttgttccctgtctctctctcgttacc 140
||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 56 tttagtaaa-ctcaatccatgctctgcttgttccctgtctctctctcattacc 5
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 37 gccagggaagaggcagtgcatgggaagag 65
|||||||||||||||||||||||| ||||
Sbjct: 100 gccagggaagaggcagtgcatgggtagag 72
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 37 gccagggaagaggcagtgcatgggaagag 65
|||||||||||||||||||||||| ||||
Sbjct: 107 gccagggaagaggcagtgcatgggtagag 79
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 36 ggccagggaagaggcagtgcatg 58
|||||||||||||||||||||||
Sbjct: 119 ggccagggaagaggcagtgcatg 97
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 102 atccatgctctgcttgttccctgtct 127
||||||||||||| ||||||||||||
Sbjct: 43 atccatgctctgcatgttccctgtct 18
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 gccagggaagaggcagtgcatg 58
||||||||||||||||||||||
Sbjct: 104 gccagggaagaggcagtgcatg 83
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 gccagggaagaggcagtgcatg 58
||||||||||||||||||||||
Sbjct: 138 gccagggaagaggcagtgcatg 117
