miRNEST 2.0, an integrative microRNA resource :: BLAST
>48349_bna-miR168:pmrd
Length = 133
Score = 218 bits (110), Expect = 9e-58
Identities = 125/130 (96%)
Strand = Plus / Plus
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 69
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
Query: 70 gttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 129
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctttccatggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 123
Query: 130 tccgacgtga 139
||||||||||
Sbjct: 124 tccgacgtga 133
>46958_ath-miR168b:pmrd
Length = 124
Score = 93.7 bits (47), Expect = 3e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 69
|||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64
Query: 70 gttttcatggttggctcgtgagc 92
|| |||||||||| | ||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87
>54388_rco-miR168:pmrd
Length = 156
Score = 73.8 bits (37), Expect = 3e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 10 cggcggcctctgattcgcttggtgcaggtcgggaactgattggct 54
|||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
>51650_ptc-miR168a:pmrd
Length = 160
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 ctctgattcgcttggtgcaggtcgggaactgatt 50
||||||||||||||||||||||||||||||||||
Sbjct: 4 ctctgattcgcttggtgcaggtcgggaactgatt 37
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 65.9 bits (33), Expect = 8e-12
Identities = 92/110 (83%), Gaps = 5/110 (4%)
Strand = Plus / Plus
Query: 21 gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 75
||||||||||||||||||||||||| ||| ||||||||||||| |||| |||| |
Sbjct: 10 gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 69
Query: 76 atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 125
| |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 70 tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 119
>46957_ath-miR168a:pmrd
Length = 138
Score = 65.9 bits (33), Expect = 8e-12
Identities = 92/110 (83%), Gaps = 5/110 (4%)
Strand = Plus / Plus
Query: 21 gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 75
||||||||||||||||||||||||| ||| ||||||||||||| |||| |||| |
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 74
Query: 76 atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 125
| |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 75 tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124
>51651_ptc-miR168b:pmrd
Length = 136
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 17 ctctgattcgcttggtgcaggtcgggaactgatt 50
|||| |||||||||||||||||||||||||||||
Sbjct: 4 ctctaattcgcttggtgcaggtcgggaactgatt 37
>54375_pts-miR168b:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcgggaactgatt 50
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54374_pts-miR168a:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcgggaactgatt 50
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54366_ptr-miR168:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcgggaactgatt 50
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>46959_ath-miR168m:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 3e-08
Identities = 83/100 (83%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----catg 78
|||||||||||||||||||||| ||| ||||||||||||| |||| |||| | |
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60
Query: 79 gttggctcgtgagcagggatcggatcccgccttgtatcaa 118
|||| | |||||||||||| ||||||||||||| |||||
Sbjct: 61 attggtttgtgagcagggattggatcccgccttgcatcaa 100
>48560_gma-miR168:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 gcggcctctgattcgcttggtgcaggtcgggaac 45
|||| |||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>54802_vvi-miR168:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctctgattcgcttggtgcaggtcgggaac 45
|||| ||||||||||||||||||||||||
Sbjct: 4 ctctaattcgcttggtgcaggtcgggaac 32
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcgggaactg 47
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>55000_zma-miR168b:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 cggatcccgccttgtatcaagtgaatc 125
|||||||||||||| ||||||||||||
Sbjct: 62 cggatcccgccttgcatcaagtgaatc 88
>54436_sbi-miR168:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 101 gatcccgccttgtatcaagtgaatccgag 129
|||||||||||| | ||||||||||||||
Sbjct: 66 gatcccgccttgcaccaagtgaatccgag 94
>54665_stu-miR168:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcggga 43
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 tcgcttggtgcaggtcggga 43
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
