miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 74/81 (91%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
|||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgttta---gatcactgaagtagtgatctaaac 61
Query: 79 gttcttatatttctttacaga 99
| |||||||||||||||||||
Sbjct: 62 gctcttatatttctttacaga 82
Score = 61.9 bits (31), Expect = 2e-09
Identities = 66/77 (85%), Gaps = 3/77 (3%)
Strand = Plus / Minus
Query: 23 ccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaatgttc 82
|||||||||||||||||||| |||||||| ||||||| ||||||||||| | ||
Sbjct: 85 ccctctgtaaagaaatataagagcgttta---gatcactacttcagtgatctaaacgctc 29
Query: 83 ttatatttctttacaga 99
|||||||||||||||||
Sbjct: 28 ttatatttctttacaga 12
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
|||||||||| |||||||||||||| |||||||| || |||| ||||||| |||||||
Sbjct: 4 gtactccctcggtaaagaaatataagagcgttta---gagcactaaagtagttatctaaa 60
Query: 78 tgttcttatatttctttacagaaggagta 106
|| ||||||||||||||| ||| ||||||
Sbjct: 61 tgctcttatatttctttatagagggagta 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 73/89 (82%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
||||||||||| ||||||||||||| ||| | |||||| ||| ||||| ||||||
Sbjct: 90 gtactccctctataaagaaatataagagcat---ttagataactactttagtgctctaaa 34
Query: 78 tgttcttatatttctttacagaaggagta 106
| |||||||||||||||| || ||||||
Sbjct: 33 cgctcttatatttctttaccgagggagta 5
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 79.8 bits (40), Expect = 8e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 52 ttagatcactgaagtagtgatctaaatgttcttatatttctttacagaaggagtaa 107
|||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct: 35 ttagatcactaaagtagttatctaaatgatcttatatttctttacagagggagtaa 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaatataa 42
||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaagaaatataa 66
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 76/88 (86%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||| |||||||||||||| ||| |||| ||||||| |||||||||||| |||
Sbjct: 89 tactccctccgtaaagaaatataagagcattta---gatcactaaagtagtgatctgaat 33
Query: 79 gttcttatatttctttacagaaggagta 106
| ||||||||| |||||||| ||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 66 tagtgatctaaatgttcttatatttctttacagaaggagtaa 107
|||||||||||||| |||||||||||||||| || |||||||
Sbjct: 49 tagtgatctaaatgctcttatatttctttacggagggagtaa 90
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
||||||| ||||||||||||||||| ||||| || ||||||| ||||||| |||||||
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtcta---gatcactaaagtagttatctaaa 60
Query: 78 tgttcttatatttctttacagaaggagta 106
|||||||||||||||| || ||||||
Sbjct: 61 cactcttatatttctttacggagggagta 89
Score = 60.0 bits (30), Expect = 7e-09
Identities = 74/88 (84%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||| |||||||||||||| || ||||| ||| ||| |||||||||| |
Sbjct: 89 tactccctccgtaaagaaatataagagtgttta---gataactactttagtgatctagac 33
Query: 79 gttcttatatttctttacagaaggagta 106
| ||||||||||||||||||||||||||
Sbjct: 32 gctcttatatttctttacagaaggagta 5
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 69.9 bits (35), Expect = 7e-12
Identities = 75/88 (85%), Gaps = 9/88 (10%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgt---ttagatca------tagtgatctaaac 55
Query: 79 gttcttatatttctttacagaaggagta 106
| ||||||||||||||||||| ||||||
Sbjct: 56 gctcttatatttctttacagagggagta 83
Score = 63.9 bits (32), Expect = 5e-10
Identities = 75/89 (84%), Gaps = 9/89 (10%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgt---ttagatcact------atgatctaaa 34
Query: 78 tgttcttatatttctttacagaaggagta 106
| ||||||||||||||||||| ||||||
Sbjct: 33 cgctcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 69.9 bits (35), Expect = 7e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 52 ttagatcactgaagtagtgatctaaatgttcttatatttctttacagaaggagta 106
|||||||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 33 ttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagta 87
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 17 ggtactccctctgtaaagaaatataaaagcgttta 51
|||||||||||||||||||||||||| || |||||
Sbjct: 89 ggtactccctctgtaaagaaatataagagtgttta 55
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 16 aggtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatcta 75
|||||||||||| ||||| |||||||||||||||| || ||| || ||||||||||
Sbjct: 2 aggtactccctccgtaaactaatataaaagcgttta---gaatactaaaatagtgatcta 58
Query: 76 aatgttcttatatttctttacagaaggagtaa 107
|| ||||||||||| |||||||| |||||||
Sbjct: 59 aacgttcttatattagtttacagagggagtaa 90
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 65.9 bits (33), Expect = 1e-10
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgttta---gatcactaaagtagtgatctaaac 61
Query: 79 gttcttatatt 89
| |||||||||
Sbjct: 62 gctcttatatt 72
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 68/79 (86%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
|||||||||||||||| |||||||| ||||||| |||| || || ||||||||||||
Sbjct: 4 gtactccctctgtaaacaaatataagggcgttta---gatctctaaaatagtgatctaaa 60
Query: 78 tgttcttatatttctttac 96
| ||||||||||||||||
Sbjct: 61 cgctcttatatttctttac 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 70/85 (82%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 22 tccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaatgtt 81
|||||| |||||||||||||| ||||| |||||||||| ||| |||||||| |
Sbjct: 86 tccctcagtaaagaaatataagagcgt---ttagatcactattttagagatctaaacgcc 30
Query: 82 cttatatttctttacagaaggagta 106
||||||||| |||||||| ||||||
Sbjct: 29 cttatatttgtttacagagggagta 5
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 52 ttagatcactgaagtagtgatctaaatgttcttatatttctttacagaaggagta 106
|||||||||| ||||||||||||||| | ||||||||| |||||||| ||||||
Sbjct: 35 ttagatcactaaagtagtgatctaaaaggtcttatattagtttacagagggagta 89
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 53 tagatcactgaagtagtgatctaaatgttcttatatttctttacaga 99
||||||||| ||||||||||||||| | |||||||||| ||||||||
Sbjct: 58 tagatcactaaagtagtgatctaaacgctcttatatttgtttacaga 12
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 82
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 66 tagtgatctaaatgttcttatatttctttacagaaggag 104
|||||||||||||| ||||||||||||||||||| ||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttat 52
|||||||||||||||||||||||| | |||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttat 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 81 tcttatatttctttacagaaggagta 106
||||||||||||||||||| ||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 ctccctctgtaaagaaatataa 42
||||||||||||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataa 55
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 74/88 (84%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||||||||| ||||||| |||| ||| ||||||| ||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagagcgctta---gatcactaaagtagtgatctaagc 33
Query: 79 gttcttatatttctttacagaaggagta 106
| ||||||||| |||||||| ||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum (bread
wheat)
Length = 92
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 54 agatcactgaagtagtgatctaaatgttcttatatttctttacagaaggagta 106
|||||||| ||||||||| ||||| | |||||||||||||||| || ||||||
Sbjct: 57 agatcactcaagtagtgacctaaacgctcttatatttctttacggagggagta 5
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgttta 51
||||||||| |||||||||||||| ||||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgttta 37
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 agtagtgatctaaatgttcttatatttctttac 96
|||||||||||||| ||||||||||||||||||
Sbjct: 47 agtagtgatctaaacgttcttatatttctttac 15
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 69/82 (84%), Gaps = 9/82 (10%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaa------gtagtgat 72
|||||||||||||||||||||||| | |||||| ||||||| || ||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgttta---gatcactaaaatagtagtagtgat 61
Query: 73 ctaaatgttcttatatttcttt 94
||||||| ||||||||||||||
Sbjct: 62 ctaaatgatcttatatttcttt 83
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 66 tagtgatctaaatgttcttatatttctttacagaaggagta 106
|||||||||||| | ||||||||||||||||||| ||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/71 (87%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 36 aatataaaagcgtttattagatcactgaagtagtgatctaaatgttcttatatttcttta 95
|||||||||||||||| ||||| | ||||||||||||||||| ||||||||| ||||
Sbjct: 22 aatataaaagcgttta---gatcatt-aagtagtgatctaaatgctcttatattagttta 77
Query: 96 cagaaggagta 106
|||| ||||||
Sbjct: 78 cagagggagta 88
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 71/83 (85%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 24 cctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaatgttct 83
|||||||||| ||||||||||| |||| ||||||| ||||||||||||||||| |||
Sbjct: 9 cctctgtaaactaatataaaagcattta---gatcact-aagtagtgatctaaatgctct 64
Query: 84 tatatttctttacagaaggagta 106
|||||| ||||| || ||||||
Sbjct: 65 tatattagtttacggagggagta 87
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 69/82 (84%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
|||||||||| ||||| ||||||| |||||||| | ||||| || ||||||||||||
Sbjct: 4 gtactccctccgtaaactaatataagagcgttta---ggtcactaaaatagtgatctaaa 60
Query: 78 tgttcttatatttctttacaga 99
|| ||||||||| ||||||||
Sbjct: 61 tgctcttatattagtttacaga 82
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 66 tagtgatctaaatgttcttatatttctttacagaaggagtaa 107
|||||||||||||| ||||||||| |||||||| |||||||
Sbjct: 45 tagtgatctaaatgctcttatattagtttacagagggagtaa 4
Score = 50.1 bits (25), Expect = 7e-06
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||||||||| ||||||| ||| | |||||||||| || |||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcat---ttagatcactaaaatagtaatctaaac 61
Query: 79 gttcttatatttctttacagaaggagtaact 109
| ||||||||| ||||| || |||||||||
Sbjct: 62 gctcttatattagtttacggagggagtaact 92
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 52/60 (86%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
|||||||||||||||| ||||||| ||| |||| ||||||| |||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagctttta---gatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 67/80 (83%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||||||||| ||||||| ||||| |||||| ||| |||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgt---ttagattactaaagtagtgttctaaat 61
Query: 79 gttcttatatttctttacag 98
| | ||||||| |||||||
Sbjct: 62 gcttttatattagtttacag 81
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 52 ttagatcactgaagtagtgatctaaatgttcttatatt 89
|||||| |||||||||||| |||||||| |||||||||
Sbjct: 35 ttagattactgaagtagtgttctaaatgctcttatatt 72
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 66 tagtgatctaaatgttcttatatttctttacagaaggagta 106
|||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 49 tagtgatctaaatgtttttatattagtttacagagggagta 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 74/90 (82%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 18 gtactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaa 77
|||||||||||||||| ||||||||| | | |||||||||| ||||||| |||||||
Sbjct: 90 gtactccctctgtaaactaatataaaaacat---ttagatcactaaagtagtaatctaaa 34
Query: 78 tgttcttatatttctttacagaaggagtaa 107
||||||||| ||||| || |||||||
Sbjct: 33 cactcttatattagtttacggagggagtaa 4
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 60/71 (84%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||||||||| ||||||| ||||| || ||||||| || ||||||||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgt---ttggatcactaaaatagtgatctaaac 61
Query: 79 gttcttatatt 89
| |||||||||
Sbjct: 62 gctcttatatt 72
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 64 agtagtgatctaaatgttcttatatttctttacagaaggagta 106
|||||||||||||| | ||||||||| |||||||| ||||||
Sbjct: 49 agtagtgatctaaaaggtcttatattagtttacagagggagta 91
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 tagtgatctaaatgttcttatatttctttacaga 99
|||||||||||||| ||||||||| ||||||||
Sbjct: 45 tagtgatctaaatgctcttatattagtttacaga 12
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 72/88 (81%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||||||||| |||||||||| || ||| || ||| || ||||||||||||
Sbjct: 89 tactccctctgtaaactaatataaaag---tttttaaattactaaactagtgatctaaac 33
Query: 79 gttcttatatttctttacagaaggagta 106
||||||||| |||||||| ||||||
Sbjct: 32 actcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgttta 51
|||||||||||||||| ||||||||||| ||||
Sbjct: 4 gtactccctctgtaaactaatataaaagcattta 37
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgttta 51
|||||||||||||||| ||||||| ||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgttta 37
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgttta 51
|||||||||||||||| |||||||||| |||||
Sbjct: 4 gtactccctctgtaaactaatataaaagtgttta 37
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 gtactccctctgtaaagaaatataaaagcgttta 51
|||||||||||||||| ||||||| ||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgttta 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 72/88 (81%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 19 tactccctctgtaaagaaatataaaagcgtttattagatcactgaagtagtgatctaaat 78
||||||||| ||||| ||||||| |||||||| || ||| || ||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgttta---gaatactaaaatagtgatctaaac 33
Query: 79 gttcttatatttctttacagaaggagta 106
| ||||||||| |||||||| ||||||
Sbjct: 32 gctcttatattagtttacagagggagta 5
