miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30338_ptr-mir-345:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 2 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
Query: 62 cgaggggtctggaggcctgggtttgaatatcgacagc 98
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaggggtctggaggcctgggtttgaatatcgacagc 97
>30961_ppy-mir-345:mirbase
Length = 98
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
Query: 61 acgaggggtctggaggcctgggtttgaatatcgacagc 98
||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 acgaggggtctggaggcctgggtttgaatatcgccagc 98
>27137_eca-mir-345:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 6 aaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgag 65
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 5 aaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactag 64
Query: 66 gggtctggaggcctgggtttgaatatcg 93
||||||||||||||||||||||||||||
Sbjct: 65 gggtctggaggcctgggtttgaatatcg 92
>27138_eca-mir-345:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 6 aaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgag 65
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 5 aaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaactag 64
Query: 66 gggtctggaggcctgggtttgaatatcg 93
||||||||||||||||||||||||||||
Sbjct: 65 gggtctggaggcctgggtttgaatatcg 92
>27857_mml-mir-345:mirbase
Length = 88
Score = 143 bits (72), Expect = 3e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 5 aaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacga 64
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1 aaaccctaggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacga 60
Query: 65 ggggtctggaggcctgggtttgaatatc 92
||| ||||||||||||||||||||||||
Sbjct: 61 gggttctggaggcctgggtttgaatatc 88
>33331_bta-mir-345:mirbase
Length = 91
Score = 143 bits (72), Expect = 3e-35
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 acccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctga 59
Query: 61 acgaggggtctggaggcctgggtttgaatatc 92
|| |||||||||||||||||||||||||||||
Sbjct: 60 actaggggtctggaggcctgggtttgaatatc 91
>33332_bta-mir-345:mirbase
Length = 91
Score = 143 bits (72), Expect = 3e-35
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 acccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctga 59
Query: 61 acgaggggtctggaggcctgggtttgaatatc 92
|| |||||||||||||||||||||||||||||
Sbjct: 60 actaggggtctggaggcctgggtttgaatatc 91
>34066_ssc-mir-345:mirbase
Length = 80
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 12 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 71
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct: 6 aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtct 65
Query: 72 ggaggcctgggtttg 86
|||||||||||||||
Sbjct: 66 ggaggcctgggtttg 80
>34067_ssc-mir-345:mirbase
Length = 80
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 12 aggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtct 71
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct: 6 aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtct 65
Query: 72 ggaggcctgggtttg 86
|||||||||||||||
Sbjct: 66 ggaggcctgggtttg 80
>26808_cfa-mir-345:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 6e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 17 tgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggagg 76
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tgctgactcttagtccagtgctcgtgatggctggtgggccctgaactaggggtctggagg 60
>32026_mmu-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 76 gcctgggtttga 87
|||||||||||
Sbjct: 75 acctgggtttga 86
>32027_mmu-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 76 gcctgggtttga 87
|||||||||||
Sbjct: 75 acctgggtttga 86
>32872_rno-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 76 gcctgggtttga 87
|||||||||||
Sbjct: 75 acctgggtttga 86
>32873_rno-mir-345:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 16 ctgctgactcctagtccagggctcgtgatggctggtgggccctgaacgaggggtctggag 75
|||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct: 15 ctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggtctggag 74
Query: 76 gcctgggtttga 87
|||||||||||
Sbjct: 75 acctgggtttga 86
