miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 catttaatatgggacggagggagta 111
|||||||||||||||||||||||||
Sbjct: 97 catttaatatgggacggagggagta 121
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 gacatttaatatgggacggagggagta 111
|||| ||||||||||||||||||||||
Sbjct: 94 gacacttaatatgggacggagggagta 120
>RF00906;MIR1122;AAAA02027770.1/12261-12396 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgtcccatacaaaa 36
|||||||||||||||||||||||
Sbjct: 132 tactccctccgtcccatacaaaa 110
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 atagtactccctccgtcccata 31
||||||||||||||||||||||
Sbjct: 93 atagtactccctccgtcccata 72
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 ttaatatgggacggagggagta 111
||||||||||||||||||||||
Sbjct: 26 ttaatatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 ttaatatgggacggagggagta 111
||||||||||||||||||||||
Sbjct: 100 ttaatatgggacggagggagta 121
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 ttaatatgggacggagggagta 111
||||||||||||||||||||||
Sbjct: 26 ttaatatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 ttaatatgggacggagggagta 111
||||||||||||||||||||||
Sbjct: 101 ttaatatgggacggagggagta 122
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 90 ttaatatgggacggagggagta 111
||||||||||||||||||||||
Sbjct: 26 ttaatatgggacggagggagta 5
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 ttaatatgggacggagggagta 111
||||||||||||||||||||||
Sbjct: 101 ttaatatgggacggagggagta 122
>RF00906;MIR1122;AAAA02012853.1/6255-6365 39946:Oryza sativa
Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 agtactccctccgtcccatacaaaaa 37
|||||||||||||||||||| |||||
Sbjct: 3 agtactccctccgtcccataaaaaaa 28
