miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 ctaaattgtcgtcgaaatattacatgtatctatacacttttaaaaaatagatacatccat 60
||||||||| |||||||||||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 19 ctaaattgttgtcgaaatattacatgtatctagacgctttttaagaatagatatatccat 78
Query: 61 atttggacaaatttga 76
|||||| |||||||||
Sbjct: 79 atttgggcaaatttga 94
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 87.7 bits (44), Expect = 2e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 1 ctaaattgtcgtcgaaatattacatgtatctatacacttttaaaaaatagatacatccat 60
||||||| | |||||||||||||||||||||| || | ||| || |||||||||||||||
Sbjct: 19 ctaaattattgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccat 78
Query: 61 atttggacaaatttga 76
|||||| |||||||||
Sbjct: 79 atttgggcaaatttga 94
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 85.7 bits (43), Expect = 7e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 18 tattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaatttga 76
||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggacaaatttga 94
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 18 tattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaatttga 76
||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggacaaatttga 32
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 75.8 bits (38), Expect = 7e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| || ||||| | | |||||||||| | |||||||||||
Sbjct: 29 gtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggacaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 4 aattgtcgtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatt 63
|||| |||||||||||||||||||||||| | | |||| ||||||||||||||||| ||
Sbjct: 102 aattctcgtcgaaatattacatgtatctagatatttttttaaaatagatacatccatttt 43
Query: 64 tgga 67
||||
Sbjct: 42 tgga 39
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 14 gaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaatt 73
||||||||||||||||||| |||||||| | ||||||||||| ||| ||||| ||||||
Sbjct: 32 gaaatattacatgtatctagacactttttaggaatagatacattcatttttggtcaaatt 91
Query: 74 tga 76
|||
Sbjct: 92 tga 94
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| || | ||| | |||||||||||||||| |||| |||
Sbjct: 97 gtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagcaa 38
Query: 71 atttga 76
||||||
Sbjct: 37 atttga 32
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
||||||||||||||| |||||| ||||||| ||| |||||||||| |||||||| |||
Sbjct: 29 gtcgaaatattacatttatctagtcactttttaaacatagatacattcatatttgatcaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| |||||||| | | ||||||||| | ||||||| |||
Sbjct: 29 gtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggcaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| || ||||| | |||||||||||||| ||||| |||
Sbjct: 29 gtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattttgggcaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| |||| | || ||||||||||||||| ||||| |||
Sbjct: 29 gtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttttgggcaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| | ||||| | |||||||||||||||||||| |||
Sbjct: 96 gtcgaaatattacatgtatctagatgctttttaggtatagatacatccatatttgggcaa 37
Query: 71 atttga 76
||||||
Sbjct: 36 atttga 31
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| || ||||| ||| |||||| ||| | ||||||| |||
Sbjct: 29 gtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggcaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| || ||||| | |||||||||||||||| ||| |||
Sbjct: 97 gtcgaaatattacatgtatctagacgctttttaggcatagatacatccatatctgggcaa 38
Query: 71 atttga 76
||||||
Sbjct: 37 atttga 32
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 15 aaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaattt 74
|||||||||||||||||| |||||||| | ||||||||||||| || |||| |||||||
Sbjct: 93 aaatattacatgtatctagacactttttagaaatagatacatctatttttgagcaaattt 34
Query: 75 ga 76
||
Sbjct: 33 ga 32
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttg 65
|||||||| ||||||||||||| |||||||| | ||||||||||||||| ||||
Sbjct: 97 gtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttttg 43
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 15 aaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaattt 74
|||||||||||||||||| || ||||| | |||||||||||||||||||| ||||||
Sbjct: 33 aaatattacatgtatctaaacgctttttaggcatagatacatccatatttgggaaaattt 92
Query: 75 ga 76
||
Sbjct: 93 ga 94
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
||||||||||| |||||||||| || | ||| | ||||||||||||||| ||||| |||
Sbjct: 97 gtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttttgggcaa 38
Query: 71 atttga 76
||||||
Sbjct: 37 atttga 32
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 12 tcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaa 71
||||||||||||||||||||| || ||||| | ||| |||||||||||||||| |||
Sbjct: 96 tcgaaatattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaat 37
Query: 72 tttga 76
|||||
Sbjct: 36 tttga 32
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||||||||||||| | ||||| ||| || || ||||||||| |||| |||
Sbjct: 97 gtcgaaatattacatgtatctagatgctttttaaacattgacacatccataattgggcaa 38
Query: 71 atttg 75
|||||
Sbjct: 37 atttg 33
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||| ||||||||||||| || |||| | |||| |||||||||| |||||||||
Sbjct: 97 gtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttttggacaa 38
Query: 71 att 73
|||
Sbjct: 37 att 35
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 50.1 bits (25), Expect = 4e-06
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 13 cgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaaat 72
|||||||||||||||||||| || ||||| | ||||||||| ||||||||||| |||
Sbjct: 94 cgaaatattacatgtatctagacgctttt-tgatatagatacaatcatatttggacgaat 36
Query: 73 ttgaa 77
|||||
Sbjct: 35 ttgaa 31
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 15 aaatattacatgtatctatacacttttaaaaaatagatacatccatatttgg 66
|||||||||||||||||| || |||| | ||||||||||||||||||||
Sbjct: 83 aaatattacatgtatctagacgttttttatgcatagatacatccatatttgg 32
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 51 atacatccatatttggacaaatttga 76
|||||||||||| |||||||||||||
Sbjct: 57 atacatccatatctggacaaatttga 32
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 2e-04
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
|||||||||||| ||||||||| || |||| | | |||||||||||| |||||| |||
Sbjct: 29 gtcgaaatattatatgtatctagac-gtttttacacatagatacatccgcatttgggcaa 87
Query: 71 atttga 76
||||||
Sbjct: 88 atttga 93
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 gtcgaaatattacatgtatcta 32
||||||||||||||||||||||
Sbjct: 99 gtcgaaatattacatgtatcta 78
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 2e-04
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 12 tcgaaatattacatgtatctatac-acttttaaaaaatagatacatccatatttggacaa 70
||||||||||||||||||||| || ||||| | |||||||| ||||| ||| |||||
Sbjct: 30 tcgaaatattacatgtatctagacgtattttagtatatagatacgtccatttttagacaa 89
Query: 71 atttga 76
||||||
Sbjct: 90 atttga 95
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 atagatacatccatatttggacaaatttga 76
|||||||| ||||||||| |||||||||||
Sbjct: 66 atagatacgtccatatttagacaaatttga 95
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 11 gtcgaaatattacatgtatctatacacttttaaaaaatagatacatccatatttggacaa 70
||||||| ||||| |||||||| || ||||| | ||||||||||| || ||||| |||
Sbjct: 29 gtcgaaacattacgtgtatctagacgctttttagtaatagatacattcaattttgggcaa 88
Query: 71 atttga 76
||||||
Sbjct: 89 atttga 94
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum
(bread wheat)
Length = 134
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 48 tagatacatccatatttggacaaat 72
||||||||||||| |||||||||||
Sbjct: 60 tagatacatccatttttggacaaat 36
