miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 81.8 bits (41), Expect = 8e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttgg 56
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccatatttgg 84
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 2e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttgg 56
||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttttaagaatagatatatccatatttgg 84
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 3e-12
Identities = 48/51 (94%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 9 tattatatgtatctagacacttttaaga-atagatacatccatatttggac 58
||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggac 86
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 2e-10
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttg 55
||||||||| ||| |||||||||||||| ||||| |||||||||||||||| ||||
Sbjct: 98 tgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttttg 43
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 7e-10
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 9 tattatatgtatctagacactttt-aagaatagatacatccatatttggac 58
||||| |||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggac 40
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 3e-09
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatcca 49
||||||||||||| |||||||||||| | ||||| |||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttttaggaatagatacatcca 77
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 1e-08
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 5 gaaatattatatgtatctagacac-ttttaagaatagatacatccatatttgg 56
||||||||| |||||||||||||| ||||| |||||||||||| ||| |||||
Sbjct: 32 gaaatattacatgtatctagacactttttaggaatagatacattcatttttgg 84
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 1e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacacttttaa-gaatagatacatccatatttgg 56
||||||||||||| |||||||||||||| | || |||||||||||||||| |||||
Sbjct: 28 tgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttttgg 84
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 58.0 bits (29), Expect = 1e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttgg 56
||||||||||||| ||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 97 tgtcgaaatattacatgtatctagatgctttttaggtatagatacatccatatttgg 41
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 1e-08
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatat 52
||||||||||||| |||||||||||| | ||||| | ||||||||||||||||
Sbjct: 98 tgtcgaaatattacatgtatctagacgctttttaggcatagatacatccatat 46
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 4e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttg 55
||||||||||||| |||||||||||| | ||||| ||||||||||||||| ||||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttg 43
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 56.0 bits (28), Expect = 4e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacacttttaagaatagatacatcc 48
|||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 28 tgtcgaaatattatatgtatctagacgtttttacacatagatacatcc 75
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 4e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacactttt 32
||||||||||||| ||||||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacactttt 59
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 4e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacacttttaag-aatagatacatc 47
|||| |||||||| |||||||||||||||||| || ||||||||||||
Sbjct: 98 tgtcaaaatattacatgtatctagacactttttagaaatagatacatc 51
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 54.0 bits (27), Expect = 2e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacacttttaaga-atagatacatccatatttggac 58
||||||||||||| |||||||||||| ||||| | | |||||||||| | |||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggac 86
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 7e-07
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacacttttaagaatagatacatccatatttggac 58
||||||||||||| ||||||| |||| ||||| | ||| ||||||| ||||||||||
Sbjct: 97 tgtcgaaatattacatgtatccagacctttttaggtataaatacatctatatttggac 40
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 2 gtcgaaatattatatgtatctagaca-cttttaagaatagatacatccatatttgga 57
|||||||||||| ||||||||||| | |||| | ||||||||||||||| ||||||
Sbjct: 95 gtcgaaatattacatgtatctagatatttttttaaaatagatacatccatttttgga 39
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacacttttaaga-atagatacatccatatttgg 56
|||| |||||||| ||||||||| || ||||| || ||||||||||||||||||||
Sbjct: 28 tgtcaaaatattacatgtatctaaacgctttttaggcatagatacatccatatttgg 84
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 50.1 bits (25), Expect = 3e-06
Identities = 51/59 (86%), Gaps = 3/59 (5%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagac---acttttaagaatagatacatccatatttgg 56
||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 100 tgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatttttgg 42
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttgg 56
|||||||||||| ||||||||| || | ||||| |||||||||||||||| |||||
Sbjct: 98 tgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttttgg 42
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagacacttttaa-gaatagatacatccatatttgg 56
|||| |||||||| |||||||||||| |||| | | ||||||||||||||||||||
Sbjct: 88 tgtcaaaatattacatgtatctagacgttttttatgcatagatacatccatatttgg 32
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 1e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttg 55
||||||||||||| || ||||||| ||| |||||| |||||||||| ||||||||
Sbjct: 28 tgtcgaaatattacatttatctagtcactttttaaacatagatacattcatatttg 83
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tgtcgaaatattatatgtatctagacactttt 32
||||||||||||| |||||||||||| |||||
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttt 59
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 4e-05
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 3 tcgaaatattatatgtatctagacac-ttttaagaatagatacatccatatttgg 56
||||||||||| ||||||||| || | ||||| | ||| ||||||||||||||||
Sbjct: 96 tcgaaatattacatgtatctaaacgctttttacgcatatatacatccatatttgg 42
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 4e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctagac-acttttaagaatagatacatccatatttggac 58
||||||||| ||| |||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 98 tgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttttggac 40
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 46.1 bits (23), Expect = 4e-05
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 4 cgaaatattatatgtatctagacacttttaagaatagatacatccatatttggac 58
|||||||||| |||||||||||| ||||| ||||||||| |||||||||||
Sbjct: 94 cgaaatattacatgtatctagacgctttttgatatagatacaatcatatttggac 40
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 tgtcgaaatattatatgtatctaga 25
||||||||||||| |||||||||||
Sbjct: 98 tgtcgaaatattacatgtatctaga 74
