miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 127 bits (64), Expect = 4e-29
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 12 aaatacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctat 71
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2 aaatactccctccgtcccatattaagtgactcaaatttgtccaaatatggatgtatctat 61
Query: 72 accccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
| ||||| || ||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 62 gcttaaaaagcgtctagatacatgtaatagaaagtcaattaatatgggacggagggagta 121
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 105 gtcacttaatatgggacggagggagta 131
|||||||||||||||||||||||||||
Sbjct: 31 gtcacttaatatgggacggagggagta 5
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 127 bits (64), Expect = 4e-29
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 28 ccatattaagtgactcaaatttgtccaaatatggatgcatctataccccaaaagtgtata 87
|||||||||||| |||||||||| ||||||||||||| ||||||||| ||||| | ||
Sbjct: 17 ccatattaagtgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatcta 76
Query: 88 gatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 77 gatacatgtaatatttcgacacttaatatgggacggagggagta 120
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 121 bits (61), Expect = 3e-27
Identities = 103/117 (88%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 121 tactccctccgtctcatattaagtgactcaaatttgtccaaatatggatgtatctatgtc 62
Query: 75 ccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
|||||||| ||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct: 61 taaaaagtgtctagatacatgtaatagaaagtcacttaatacgggacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gtcacttaatatgggacggagggagtaata 134
||||||||||||| ||||||||||||||||
Sbjct: 95 gtcacttaatatgagacggagggagtaata 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 aaatacttcctccgtcccatattaagtgact 42
||||||| |||||||||| ||||||||||||
Sbjct: 2 aaatactccctccgtcccgtattaagtgact 32
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 113 bits (57), Expect = 7e-25
Identities = 106/121 (87%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 12 aaatacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctat 71
||||||| ||||||||||||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct: 125 aaatactccctccgtcccatattaagtgactcaaatttgtctaaaaatggacgtatctat 66
Query: 72 accccaaaa-gtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagt 130
| | |||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 65 atactaaaatacgtctagatacatgtaatatttcgaaacttaatatgggacggagggagt 6
Query: 131 a 131
|
Sbjct: 5 a 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 gtcacttaatatgggacggagggagta 131
|||||||||||||||||||||||||||
Sbjct: 96 gtcacttaatatgggacggagggagta 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 aatacttcctccgtcccatattaagt 38
|||||| |||||||||||||||||||
Sbjct: 3 aatactccctccgtcccatattaagt 28
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 109 bits (55), Expect = 1e-23
Identities = 101/115 (87%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| |||||||| |||||||||||| ||||||| ||||||||||| || ||||||| |
Sbjct: 5 tactccctccgtctcatattaagtgattcaaattcgtccaaatatgattgtatctatatc 64
Query: 75 ccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggag 129
||||| || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 65 a-aaaagcgtctagatacatgtaatatttcgtcacttaatatgagacggagggag 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 106 tcacttaatatgggacggagggagtaat 133
|||||||||||| |||||||||||||||
Sbjct: 30 tcacttaatatgagacggagggagtaat 3
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 105 bits (53), Expect = 2e-22
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| ||||||||| |||||||||||||||||||| |||||||||||| |||||| ||
Sbjct: 5 tactccctccgtcctatattaagtgactcaaatttaatcaaatatggatgtatctatgcc 64
Query: 75 ccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
|||| ||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 65 taaaaaatgtctagatgcatgtaatagaaagtcatttaatatgggacggagggagta 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 105 gtcacttaatatgggacggagggagta 131
|||||||||||| ||||||||||||||
Sbjct: 31 gtcacttaatataggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccatattaagtgact 42
|||||| ||||||||||||||||| |||||
Sbjct: 123 aatactccctccgtcccatattaaatgact 94
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 91.7 bits (46), Expect = 2e-18
Identities = 101/118 (85%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| ||||| ||||||||||||||||| ||||||||| ||| ||| | | |||||||
Sbjct: 122 tactccctccatcccatattaagtgacttaaatttgtctaaaaatgtacgtatctatata 63
Query: 75 ccaaaag-tgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
| |||| ||| ||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct: 62 ctaaaatatgtttagatacatataatatttcggcacttaatatgggacggagggagta 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 105 gtcacttaatatgggacggagggagtaataa 135
|||||||||||||||| ||||||||||||||
Sbjct: 96 gtcacttaatatgggatggagggagtaataa 126
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 91.7 bits (46), Expect = 2e-18
Identities = 101/118 (85%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct: 122 tactccctccgtcccatattaagtgactcaaatttgtctaaatatggacgtatctatata 63
Query: 75 cca-aaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
| | ||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 62 ctagaaaacgtctagatacatgtaatagaaagtcacttaatttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 gtcacttaatatgggacggagggagta 131
|||||||||||||||||||||||||||
Sbjct: 96 gtcacttaatatgggacggagggagta 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 aaatacttcctccgtcccatattaagtgact 42
||||||| ||||||||||| |||||||||||
Sbjct: 2 aaatactccctccgtcccaaattaagtgact 32
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 6e-16
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatac 73
|||||||||||| |||||| || || |||||||||| ||| ||||||||| |||||| |
Sbjct: 4 atacttcctccgatccatatcaattgtctcaaatttgcccagatatggatgtatctatgc 63
Query: 74 cccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
| ||||| || ||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 64 ctaaaaagcgtctagatacatgtaatatttcgacaactaatatggatcggagggagta 121
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 99/117 (84%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| |||| |||||||||||| || ||| ||||||||||||||| |||| || ||||||
Sbjct: 5 tactccctctgtcccatattaattgtctcgaatttgtccaaatatagatgtatttatacc 64
Query: 75 ccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
||||| || | ||| |||||||||||||| || ||||||||| ||||||| ||||
Sbjct: 65 taaaaag-gtctggatacatgtaatatttcgacaattaatatggaacggaggaagta 120
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 79.8 bits (40), Expect = 9e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 21 ctccgtcccatattaagtgactcaaatttgtccaaatatggatg 64
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11 ctccgtcccatattaagtgactcaaatttgtccagatatggatg 54
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 105 gtcacttaatatgggacggagggagta 131
||||||||||||||||||||| |||||
Sbjct: 31 gtcacttaatatgggacggagagagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 ctccgtcccatattaagtgact 42
||||||||||||||||||||||
Sbjct: 114 ctccgtcccatattaagtgact 93
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 28 ccatattaagtgactcaaatttgtccaaatatggatgcatctataccccaaaagtgtata 87
|||||| || || ||||||||| ||||||||||||| |||||| || ||||| || ||
Sbjct: 108 ccatatcaattgtctcaaattttcccaaatatggatgtatctatgcctaaaaagcgttta 49
Query: 88 gatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
||| |||||||||||| | || ||||||||| |||||||||||
Sbjct: 48 gatacatgtaatattttgacaattaatatggatcggagggagta 5
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 41 ctcaaatttgtccaaatatggatgcatctataccccaaaagtgtatagatgcatgtaata 100
|||||||||| ||||| ||| ||| |||||| || |||||||| ||||| |||||||||
Sbjct: 95 ctcaaatttgaccaaaaatgaatgtatctattcctaaaaagtgtctagatacatgtaata 36
Query: 101 tttc 104
||||
Sbjct: 35 tttc 32
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 38 tgactcaaatttgtccaaatatggatgcatctataccccaaaagtgtatagatgcatgta 97
||||||||||||| |||||||||||| |||||| | ||||| || ||||| ||||||
Sbjct: 98 tgactcaaatttgcccaaatatggatatatctattcttaaaaagcgtctagatacatgta 39
Query: 98 atatttcg 105
||||||||
Sbjct: 38 atatttcg 31
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| |||||| ||||||||| || |||||||||| ||||||| | ||||||||||
Sbjct: 121 tactccctccgacccatattacttgtctcaaatttgcccaaatacgaatgcatctatgtt 62
Query: 75 ccaaaagtgtatagatgcatgtaatatttcg 105
||||| || ||||| ||||||||||||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcg 31
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 86 tagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct: 76 tagatacatgtaatatttcgacaagtaatatgggtcggagggagta 121
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgt 51
|||| ||||||||||| |||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaactttgt 41
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 105 gtcacttaatatgggacggagggagtaa 132
|||||||||| |||||||||||||||||
Sbjct: 31 gtcacttaatttgggacggagggagtaa 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaa 45
|||| ||||||||||| ||||||||||||||
Sbjct: 113 tactccctccgtcccaaattaagtgactcaa 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 105 gtcacttaatatgggacggagggagta 131
|||||||||| ||||||||||||||||
Sbjct: 87 gtcacttaatttgggacggagggagta 113
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 94/117 (80%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaaatttgtccaaatatggatgcatctatacc 74
|||| |||||| |||||||| || |||||||||| |||||||| ||| ||||||
Sbjct: 121 tactccctccgatccatattacttgtctcaaatttgatcaaatatgaatgtatctatgtt 62
Query: 75 ccaaaagtgtatagatgcatgtaatatttcgtcacttaatatgggacggagggagta 131
||||||| ||||| ||||||||||||| || ||||||||| |||||||||||
Sbjct: 61 taaaaagtgactagataaatgtaatatttcgacaagtaatatgggtcggagggagta 5
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 41 ctcaaatttgtccaaatatggatgcatctataccccaaaagtgtatagatgcatgtaata 100
|||||||||| ||||| |||||| |||||| || ||||| || ||||| |||||||||
Sbjct: 95 ctcaaatttgcccaaaattggatgtatctattcctaaaaagcgtctagatacatgtaata 36
Query: 101 tttcg 105
|||||
Sbjct: 35 tttcg 31
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 50.1 bits (25), Expect = 8e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 41 ctcaaatttgtccaaatatggatgcatctataccccaaaagtgtatagatgcatgtaata 100
|||||||||| ||||||||||||| |||||| | ||| | || ||||| |||||||||
Sbjct: 95 ctcaaatttgcccaaatatggatgtatctattcttaaaacgcgtctagatacatgtaata 36
Query: 101 tttcg 105
|||||
Sbjct: 35 tttcg 31
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 52 ccaaatatggatgcatctataccccaaaagtgtatagatgcatgtaatatttcgtcactt 111
||||||||||||| |||||| | |||| || ||||| |||||||||||| | || ||
Sbjct: 32 ccaaatatggatgtatctatgcataaaaaacgtctagatacatgtaatattttgacaatt 91
Query: 112 aatatgggacggagggagta 131
||||||| |||||||||||
Sbjct: 92 aatatggatcggagggagta 111
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccatattaagtgactcaa 45
|||| ||||||||||| ||||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaa 60
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 105 gtcacttaatatgggacggagggagta 131
|||||||||| ||||||||||||||||
Sbjct: 64 gtcacttaatttgggacggagggagta 90
>RF01058;MIR806;AP005542.3/3261-3021 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccatattaagtg 39
|||||||||||||||||| |||||||
Sbjct: 1 atacttcctccgtcccattttaagtg 26
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 14 atacttcctccgtcccatattaagtgactcaaatttgt 51
||||| ||||||||||| | |||||||||||| |||||
Sbjct: 101 atactccctccgtcccaaaataagtgactcaactttgt 64
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccatattaagtgactcaaatttgt 51
||||| ||||||||||| | |||||||||||| |||||
Sbjct: 4 atactccctccgtcccaaaataagtgactcaactttgt 41
>RF00906;MIR1122;AAAA02018486.1/27307-27424 39946:Oryza sativa
Indica Group
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 114 tatgggacggagggagtaataa 135
||||||||||||||||||||||
Sbjct: 22 tatgggacggagggagtaataa 1
>RF00906;MIR1122;AAAA02028930.1/6053-6188 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 gaaatacttcctccgtcccata 32
||||||||||||||||||||||
Sbjct: 136 gaaatacttcctccgtcccata 115
>RF00906;MIR1122;AP004687.2/98890-98773 39947:Oryza sativa Japonica
Group
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 tatgggacggagggagtaataa 135
||||||||||||||||||||||
Sbjct: 97 tatgggacggagggagtaataa 118
>RF00906;MIR1122;AB206885.1/121-10 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gaaatacttcctccgtcccata 32
||||||||||||||||||||||
Sbjct: 1 gaaatacttcctccgtcccata 22
