miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q0J952|C3H32_ORYSJ Zinc finger CCCH domain-containing protein 32
OS=Oryza sativa subsp. japonica GN=Os04g0671800 PE=2
SV=1
Length = 711
Score = 50.8 bits (120), Expect = 3e-06
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +1
Query: 10 APEEDELLKRNTDCVYFLASPLTCKKG 90
APEE E L+RNTDCVYFLASPLTCKKG
Sbjct: 25 APEE-EALRRNTDCVYFLASPLTCKKG 50
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17
OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1
Length = 669
Score = 47.8 bits (112), Expect = 2e-05
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +1
Query: 1 QSTAPEEDELLKRNTDCVYFLASPLTCKKG 90
++ + E++ LK NTDCVYFLASPLTCKKG
Sbjct: 19 ETVSSAEEDALKWNTDCVYFLASPLTCKKG 48
>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein
19 OS=Oryza sativa subsp. japonica GN=Os02g0831100 PE=2
SV=2
Length = 647
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1
Query: 19 EDELLKRNTDCVYFLASPLTCKKG 90
E+ +R+TDC+YFLASPLTCKKG
Sbjct: 12 EEARRRRSTDCIYFLASPLTCKKG 35
