miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcacaggccggcaactgtat 47
|||||||||||||||||||||| || ||||| |||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaattgtat 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtcag 102
|||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtcag 82
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcacaggccggcaactgtat 47
|||||||||||||||||||||| || ||||| |||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaattgtat 37
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tgtgctcacttctctttctgtcag 102
||||||||||||||||||||||||
Sbjct: 58 tgtgctcacttctctttctgtcag 81
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tgtgctcacttctctttctgtcag 102
||||||||||||||||||||||||
Sbjct: 57 tgtgctcacttctctttctgtcag 80
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcacaggccggcaa 41
|||||||||||||||||||||| || |||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggcaa 31
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtcag 102
|||||||||||||||||||||||
Sbjct: 95 gtgctcacttctctttctgtcag 117
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtcag 102
|||||||||||||||||||||||
Sbjct: 102 gtgctcacttctctttctgtcag 124
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtcag 102
|||||||||||||||||||||||
Sbjct: 64 gtgctcacttctctttctgtcag 86
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya (papaya)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtca 101
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtca 101
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 gtgctcacttctctttctgtca 101
||||||||||||||||||||||
Sbjct: 62 gtgctcacttctctttctgtca 83
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacag 33
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacag 23
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacag 33
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacag 23
