miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55109_zma-miR437c:pmrd
Length = 177
Score = 52.0 bits (26), Expect = 2e-07
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 128 agcatttatttgaacatgtagatgccaatatannnnnnnatagacttggtcaaagttaga 187
||||||||||||||| ||||||||| |||||| | | ||||||||||||||||
Sbjct: 108 agcatttatttgaacttgtagatgctaatatatttttcaaaaagcttggtcaaagttaga 167
Query: 188 gaagttt 194
|||||||
Sbjct: 168 gaagttt 174
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 aacttctctaactttgacca 64
||||||||||||||||||||
Sbjct: 173 aacttctctaactttgacca 154
>55112_zma-miR437f:pmrd
Length = 342
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 30 acttggtcaaagttagagaagttt 7
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 3 agtcaaacttctctaactttgacca 27
>55107_zma-miR437a:pmrd
Length = 342
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 313 acttggtcaaagttagagaagttt 336
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 340 agtcaaacttctctaactttgacca 316
>54516_sbi-miR437t:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 142 acttggtcaaagttagagaagttt 165
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 169 agtcaaacttctctaactttgacca 145
>54512_sbi-miR437p:pmrd
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 158 acttggtcaaagttagagaagttt 181
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 185 agtcaaacttctctaactttgacca 161
>54507_sbi-miR437k:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 142 acttggtcaaagttagagaagttt 165
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 173 ttggtcaaagttagagaagttt 194
||||||||||||||||||||||
Sbjct: 27 ttggtcaaagttagagaagttt 6
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 169 agtcaaacttctctaactttgacca 145
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aacttctctaactttgacca 64
||||||||||||||||||||
Sbjct: 7 aacttctctaactttgacca 26
>54506_sbi-miR437j:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 27 acttggtcaaagttagagaagttt 4
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 171 agtcaaacttctctaactttgacca 147
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 174 tggtcaaagttagagaagttt 194
|||||||||||||||||||||
Sbjct: 147 tggtcaaagttagagaagttt 167
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aacttctctaactttgacca 64
||||||||||||||||||||
Sbjct: 5 aacttctctaactttgacca 24
>54504_sbi-miR437g:pmrd
Length = 176
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 146 acttggtcaaagttagagaagttt 169
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 173 agtcaaacttctctaactttgacca 149
>54503_sbi-miR437f:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 144 acttggtcaaagttagagaagttt 167
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 171 agtcaaacttctctaactttgacca 147
>54502_sbi-miR437e:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 73 acttggtcaaagttagagaagttt 96
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 100 agtcaaacttctctaactttgacca 76
>54500_sbi-miR437b:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 143 acttggtcaaagttagagaagttt 166
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 170 agtcaaacttctctaactttgacca 146
>48988_osa-miR437:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 147 acttggtcaaagttagagaagttt 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 174 agtcaaacttctctaactttgacca 150
>48987_osa-miR437:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 147 acttggtcaaagttagagaagttt 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 174 agtcaaacttctctaactttgacca 150
>48986_osa-miR437:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||||||||||||
Sbjct: 147 acttggtcaaagttagagaagttt 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacca 64
|||| ||||||||||||||||||||
Sbjct: 174 agtcaaacttctctaactttgacca 150
>54501_sbi-miR437d:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 1e-05
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgaccacatttataatggaatgcaccaatatctacaacat 98
|||| ||||||||||||||| |||| |||||| ||||||||||||| ||||||||
Sbjct: 133 agtcaaacttctctaactttaaccaagtttataggaaaatgcaccaatatttacaacat 75
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||| ||||||||||||||||
Sbjct: 106 acttggttaaagttagagaagttt 129
>54514_sbi-miR437r:pmrd
Length = 180
Score = 44.1 bits (22), Expect = 5e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 167 atagacttggtcaaagttagagaagtttta 196
||||||||||||||| | ||||||||||||
Sbjct: 32 atagacttggtcaaaataagagaagtttta 3
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
|||||| |||||||||||||||||
Sbjct: 150 acttggccaaagttagagaagttt 173
>55108_zma-miR437b:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||| ||||||||||||||||||
Sbjct: 139 acttgttcaaagttagagaagttt 162
>54651_sof-miR437:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||| ||||||||||||||||||
Sbjct: 120 acttgatcaaagttagagaagttt 143
>54519_sbi-miR437w:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||| ||||||||||||||||
Sbjct: 145 acttggtgaaagttagagaagttt 168
>54518_sbi-miR437v:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
|||||| |||||||||||||||||
Sbjct: 86 acttggacaaagttagagaagttt 109
>54517_sbi-miR437u:pmrd
Length = 164
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||| ||||||||||||||||
Sbjct: 136 acttggtgaaagttagagaagttt 159
>54515_sbi-miR437s:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 40 agtcgaacttctctaactttgacc 63
|||| |||||||||||||||||||
Sbjct: 173 agtcaaacttctctaactttgacc 150
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 ggtcaaagttagagaagttt 194
||||||||||||||||||||
Sbjct: 150 ggtcaaagttagagaagttt 169
>54513_sbi-miR437q:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 167 atagacttggtcaaagttagagaagttt 194
||||| ||||| ||||||||||||||||
Sbjct: 126 atagagttggtaaaagttagagaagttt 153
>54511_sbi-miR437o:pmrd
Length = 175
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
|||| |||||||||||||||||||
Sbjct: 145 acttagtcaaagttagagaagttt 168
>54510_sbi-miR437n:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
||||||| ||||||||||||||||
Sbjct: 152 acttggttaaagttagagaagttt 175
>54508_sbi-miR437l:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
|||||| |||||||||||||||||
Sbjct: 142 acttggccaaagttagagaagttt 165
>54505_sbi-miR437i:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 acttggtcaaagttagagaagttt 194
||||||||||||||| ||||||||
Sbjct: 27 acttggtcaaagttaaagaagttt 4
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 acttggtcaaagttagagaagttt 194
|||| |||||||||||||||||||
Sbjct: 142 actttgtcaaagttagagaagttt 165
>51322_pci-miR437:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 171 acttggtcaaagttagagaagttt 194
|||||||||||| |||||||||||
Sbjct: 69 acttggtcaaagctagagaagttt 46
