miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00794;mir-42;AAGD02000348.1/78552-78654 31234:Caenorhabditis
remanei
Length = 103
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 2 aaacccttgtcggacctttgtggatgtttcctttttcggtgaagttgttccgttgaatta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacccttgtcggacctttgtggatgtttcctttttcggtgaagttgttccgttgaatta 60
Query: 62 tcttcttcaccgggttaacatctacagaggtcctcgagggttt 104
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttcttcaccgggttaacatctacagaggtcctcgagggttt 103
>RF00794;mir-42;ABEG01022483.1/35537-35633 135651:Caenorhabditis
brenneri
Length = 97
Score = 85.7 bits (43), Expect = 1e-16
Identities = 87/102 (85%), Gaps = 6/102 (5%)
Strand = Plus / Plus
Query: 3 aacccttgtcggacctttgtggatgtttcctttttcggtgaagttgttccgttgaattat 62
|||||||||||||||||||||||||||| | |||||||||||||| | || ||
Sbjct: 2 aacccttgtcggacctttgtggatgtttgccttttcggtgaagtt------tcaaaagat 55
Query: 63 cttcttcaccgggttaacatctacagaggtcctcgagggttt 104
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 56 attcttcaccgggttaacatctacagaggtcctgaagggttt 97
>RF00794;mir-42;Z70213.1/12424-12524 6239:Caenorhabditis elegans
Length = 101
Score = 81.8 bits (41), Expect = 2e-15
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand = Plus / Plus
Query: 3 aacccttgtcggacctttgtggatgtttcctttttcggtgaagttgt--tccgttgaatt 60
||||||| ||||||||||||| ||||| |||||||||||||||||| ||||| | |
Sbjct: 1 aacccttcgcggacctttgtgggtgtttgctttttcggtgaagttgtcttccgtagctt- 59
Query: 61 atcttcttcaccgggttaacatctacagaggtcc 94
||||||||||||||||||||||||||||||||
Sbjct: 60 --cttcttcaccgggttaacatctacagaggtcc 91
>RF00794;mir-42;CAAC02000450.1/2292468-2292373 6238:Caenorhabditis
briggsae
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 79/93 (84%), Gaps = 7/93 (7%)
Strand = Plus / Plus
Query: 3 aacccttgtcggacctttgtggatgtttcctttttcggtgaagttgttccgttgaattat 62
|||||||||||||||||||||| |||| | |||||||||||||| | ||||
Sbjct: 2 aacccttgtcggacctttgtgggtgttcgccttttcggtgaagttact-----gaatg-- 54
Query: 63 cttcttcaccgggttaacatctacagaggtcct 95
|||||||||||||||||||||||||||||||||
Sbjct: 55 cttcttcaccgggttaacatctacagaggtcct 87
>RF00794;mir-42;ABLE02021980.1/2524-2428 281687:Caenorhabditis
japonica
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 66 cttcaccgggttaacatctacagaggtcc 94
|||||||||||||||||||||||||||||
Sbjct: 60 cttcaccgggttaacatctacagaggtcc 88
