miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39309_cre-MIR909:mirbase
Length = 471
Score = 283 bits (143), Expect = 6e-77
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388
Query: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448
Query: 449 ccttcagccacttgtgcgggaac 471
|||||||||||||||||||||||
Sbjct: 449 ccttcagccacttgtgcgggaac 471
Score = 274 bits (138), Expect = 6e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
Query: 61 ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
Query: 121 gccccgctccagggcctt 138
||||||||||||||||||
Sbjct: 121 gccccgctccagggcctt 138
Score = 182 bits (92), Expect = 2e-46
Identities = 129/140 (92%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 333 agaaggctccggagcggggcaggcc-caggcagggccattcagggtcaagtttgcatgcc 391
||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 140 agaaggccctggagcggggcaggccgcaggcagggccattcagggtcatgtttgcatgcc 81
Query: 392 cgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtgacct 451
||||||||||| ||||||| |||||||||||||||||||||| ||| |||||| |||||
Sbjct: 80 cgtgtggcaaggagctgcgggaccacatggccaccgtgtcggcaaagagctccgcgacct 21
Query: 452 tcagccacttgtgcgggaac 471
|||||||| |||||||||||
Sbjct: 20 tcagccacgtgtgcgggaac 1
Score = 178 bits (90), Expect = 3e-45
Identities = 121/130 (93%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 1 gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 471 gttcccgcacaagtggctgaaggtcacggagcccttcgccgacacggtggccatgtggta 412
Query: 61 ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 411 ccgcagcgtcttgccacacgggcatgcaaacttgaccctgaatggccctgcctg-ggcct 353
Query: 121 gccccgctcc 130
||||||||||
Sbjct: 352 gccccgctcc 343
Score = 129 bits (65), Expect = 2e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261
Query: 262 cagcg 266
|||||
Sbjct: 262 cagcg 266
>39308_cre-MIR909:mirbase
Length = 471
Score = 283 bits (143), Expect = 6e-77
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388
Query: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448
Query: 449 ccttcagccacttgtgcgggaac 471
|||||||||||||||||||||||
Sbjct: 449 ccttcagccacttgtgcgggaac 471
Score = 274 bits (138), Expect = 6e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
Query: 61 ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
Query: 121 gccccgctccagggcctt 138
||||||||||||||||||
Sbjct: 121 gccccgctccagggcctt 138
Score = 182 bits (92), Expect = 2e-46
Identities = 129/140 (92%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 333 agaaggctccggagcggggcaggcc-caggcagggccattcagggtcaagtttgcatgcc 391
||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 140 agaaggccctggagcggggcaggccgcaggcagggccattcagggtcatgtttgcatgcc 81
Query: 392 cgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtgacct 451
||||||||||| ||||||| |||||||||||||||||||||| ||| |||||| |||||
Sbjct: 80 cgtgtggcaaggagctgcgggaccacatggccaccgtgtcggcaaagagctccgcgacct 21
Query: 452 tcagccacttgtgcgggaac 471
|||||||| |||||||||||
Sbjct: 20 tcagccacgtgtgcgggaac 1
Score = 178 bits (90), Expect = 3e-45
Identities = 121/130 (93%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 1 gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 471 gttcccgcacaagtggctgaaggtcacggagcccttcgccgacacggtggccatgtggta 412
Query: 61 ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 411 ccgcagcgtcttgccacacgggcatgcaaacttgaccctgaatggccctgcctg-ggcct 353
Query: 121 gccccgctcc 130
||||||||||
Sbjct: 352 gccccgctcc 343
Score = 129 bits (65), Expect = 2e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261
Query: 262 cagcg 266
|||||
Sbjct: 262 cagcg 266
