miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39556_ppt-MIR902f:mirbase
          Length = 123

 Score =  244 bits (123), Expect = 1e-65
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagagaatgctcttttgccttcgctaagatatgatgcagattcttcatctgcgggatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gagagaatgctcttttgccttcgctaagatatgatgcagattcttcatctgcgggatatt 60

                                                                       
Query: 61  cttgcgtggtataacagacgaagatctgcatcataaccaagcgggagtaaacattgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cttgcgtggtataacagacgaagatctgcatcataaccaagcgggagtaaacattgtgct 120

              
Query: 121 acc 123
           |||
Sbjct: 121 acc 123




>39546_ppt-MIR902a:mirbase
          Length = 223

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 72/82 (87%), Gaps = 2/82 (2%)
 Strand = Plus / Plus

                                                                       
Query: 22  cgctaagatatgatgcagattcttcatctgcgggatattcttgcgtggtataacagacga 81
           ||||| |||||||||||||||||||| ||| | |||| ||||| |  |||||||||||||
Sbjct: 97  cgctacgatatgatgcagattcttcacctgtgtgatactcttgag--gtataacagacga 154

                                 
Query: 82  agatctgcatcataaccaagcg 103
           || ||||||||||| |||||||
Sbjct: 155 aggtctgcatcatagccaagcg 176




>39545_ppt-MIR902a:mirbase
          Length = 223

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 72/82 (87%), Gaps = 2/82 (2%)
 Strand = Plus / Plus

                                                                       
Query: 22  cgctaagatatgatgcagattcttcatctgcgggatattcttgcgtggtataacagacga 81
           ||||| |||||||||||||||||||| ||| | |||| ||||| |  |||||||||||||
Sbjct: 97  cgctacgatatgatgcagattcttcacctgtgtgatactcttgag--gtataacagacga 154

                                 
Query: 82  agatctgcatcataaccaagcg 103
           || ||||||||||| |||||||
Sbjct: 155 aggtctgcatcatagccaagcg 176




>39548_ppt-MIR902b:mirbase
          Length = 223

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ataacagacgaagatctgcatcataaccaag 101
           ||||||||||||| ||||||||||| |||||
Sbjct: 144 ataacagacgaaggtctgcatcatagccaag 174



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tatgatgcagattcttcatctg 51
           ||||||||||||||||||||||
Sbjct: 98  tatgatgcagattcttcatctg 119




>39547_ppt-MIR902b:mirbase
          Length = 223

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 71  ataacagacgaagatctgcatcataaccaag 101
           ||||||||||||| ||||||||||| |||||
Sbjct: 144 ataacagacgaaggtctgcatcatagccaag 174



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tatgatgcagattcttcatctg 51
           ||||||||||||||||||||||
Sbjct: 98  tatgatgcagattcttcatctg 119




>39558_ppt-MIR902g:mirbase
          Length = 141

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tatgatgcagattcttcatctg 51
          ||||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatctg 55




>39557_ppt-MIR902g:mirbase
          Length = 141

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tatgatgcagattcttcatctg 51
          ||||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatctg 55




>39554_ppt-MIR902e:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tatgatgcagattcttcatctg 51
          ||||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatctg 55




>39553_ppt-MIR902e:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tatgatgcagattcttcatctg 51
          ||||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatctg 55




>39550_ppt-MIR902c:mirbase
          Length = 134

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tatgatgcagattcttcatctg 51
          ||||||||||||||||||||||
Sbjct: 35 tatgatgcagattcttcatctg 56




>39549_ppt-MIR902c:mirbase
          Length = 134

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tatgatgcagattcttcatctg 51
          ||||||||||||||||||||||
Sbjct: 35 tatgatgcagattcttcatctg 56




>39552_ppt-MIR902d:mirbase
          Length = 129

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50




>39551_ppt-MIR902d:mirbase
          Length = 129

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50