miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48393_bra-miR157a:pmrd
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 60
Query: 61 atgtatcatcacaccgcctgtggatgattacaaaaatagcctgcatgtctactctttcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtatcatcacaccgcctgtggatgattacaaaaatagcctgcatgtctactctttcgt 120
Query: 121 gctctctatacttctgtcaccaccattat 149
|||||||||||||||||||||||||||||
Sbjct: 121 gctctctatacttctgtcaccaccattat 149
>48337_bna-miR156b:pmrd
Length = 208
Score = 194 bits (98), Expect = 1e-50
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 71
Query: 61 atgtatcatcacaccgcctgtggatgattacaaaaata 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atgtatcatcacaccgcctgtggatgattacaaaaata 109
Score = 103 bits (52), Expect = 4e-23
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 98 agcctgcatgtctactctttcgtgctctctatacttctgtcaccaccattat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 agcctgcatgtctactctttcgtgctctctatacttctgtcaccaccattat 188
>46926_ath-miR157c:pmrd
Length = 217
Score = 135 bits (68), Expect = 1e-32
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtacatatgt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11 gtgatgttggttgttgacagaagatagagagcactaaggatgacatgcaagtacatacat 70
Query: 61 atgtatcatcacaccgcctgtggatgat 88
|| |||||||||||||| ||||||||||
Sbjct: 71 atatatcatcacaccgcatgtggatgat 98
Score = 75.8 bits (38), Expect = 8e-15
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 100 cctgcatgtctactctttcgtgctctctatacttctgtcaccaccattat 149
||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 149 cctgcatctctactcttttgtgctctctatacttctgtcaccacctttat 198
>48338_bna-miR156c:pmrd
Length = 155
Score = 101 bits (51), Expect = 1e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 1 gtgatgctggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 55
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgatgcaggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 59
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 92 aaaaatagcctgcatgtctactctttcgtgctctctatacttctgtcaccaccattat 149
||||| ||||||||| | |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 90 aaaaagagcctgcatctttactcttttgtgctctctatacttctgtcaataccattat 147
>48384_bol-miR157a:pmrd
Length = 106
Score = 93.7 bits (47), Expect = 4e-20
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 9 ggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 55
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttgttgacagaagatagagagcactaaggatgacatgcaagtaca 47
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 tactctttcgtgctctctatacttctgtca 139
|||||||| |||||||||||||||||||||
Sbjct: 72 tactcttttgtgctctctatacttctgtca 101
>46927_ath-miR157d:pmrd
Length = 221
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 tggttgttgacagaagatagagagcactaaggatg 42
|||||| ||||||||||||||||||||||||||||
Sbjct: 17 tggttgctgacagaagatagagagcactaaggatg 51
>48698_mtr-miR157:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcactaaggatgacatgca 49
|||||||||||||||| ||||||||||||| |||||
Sbjct: 1 ttgacagaagatagagggcactaaggatgatatgca 36
>54661_stu-miR157a:pmrd
Length = 91
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcactaaggatgacatgc 48
|||||||||||||||||||||||| ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>54532_sly-miR156a:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcactaaggatgacatgc 48
|||||||||||||||||||||||| ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>54774_vvi-miR156i:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcactaaggatgacatgcaag 51
||||||||||||||||||||||||| | ||||| |||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatgaaatgcaag 48
>51598_ptc-miR156h:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcactaaggatgacatgca 49
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
>48695_mtr-miR156e:pmrd
Length = 172
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ggttgttgacagaagatagagagcac 34
||||||||||||||||||||||||||
Sbjct: 1 ggttgttgacagaagatagagagcac 26
>48532_gma-miR156e:pmrd
Length = 124
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcactaaggatgacatgca 49
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 19 tgttgacagaagatagagagcactgatgatgaaatgca 56
>48531_gma-miR156d:pmrd
Length = 151
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ggttgttgacagaagatagagagcac 34
||||||||||||||||||||||||||
Sbjct: 16 ggttgttgacagaagatagagagcac 41
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 110 tactctttcgtgctctctatacttctgtcaccacc 144
||||| || ||||||||||||||||||||| ||||
Sbjct: 102 tactcctttgtgctctctatacttctgtcatcacc 136
>54772_vvi-miR156g:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcac 34
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 13 gttgacagaagatagagagcactaaggatgacatgca 49
||||||||||||||||||||||| | ||||| |||||
Sbjct: 1 gttgacagaagatagagagcactgacgatgaaatgca 37
>51600_ptc-miR156j:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcac 34
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>51599_ptc-miR156i:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcac 34
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>51597_ptc-miR156g:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcac 34
|||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcac 31
>48631_gra-miR157b:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcac 34
|||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcac 25
>48630_gra-miR157a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttgttgacagaagatagagagcac 34
|||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcac 25
>48696_mtr-miR156f:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgttgacagaagatagagagcac 34
||||||||||||||||||||||||
Sbjct: 3 ttgttgacagaagatagagagcac 26
>48537_gma-miR157c:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 14 ttgacagaagatagagagcactaaggatgacatgca 49
|||||||||||||||||||||| | ||||| |||||
Sbjct: 84 ttgacagaagatagagagcactgatgatgaaatgca 49
>54771_vvi-miR156f:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcac 34
|||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcac 31
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcac 34
|||||||||||||||||||||||
Sbjct: 1 tgttgacagaagatagagagcac 23
>48697_mtr-miR156h:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcac 34
|||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcac 26
>48530_gma-miR156c:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcac 34
|||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcac 166
>46925_ath-miR157b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcac 34
|||||||||||||||||||||||
Sbjct: 17 tgttgacagaagatagagagcac 39
>46924_ath-miR157a:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgttgacagaagatagagagcac 34
|||||||||||||||||||||||
Sbjct: 2 tgttgacagaagatagagagcac 24
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcac 34
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcac 34
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48790_nta-miR157:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcac 34
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcac 34
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagcac 34
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 111 actctttcgtgctctctatacttctgtca 139
|||| |||||||||||||| |||||||||
Sbjct: 57 actccttcgtgctctctatgcttctgtca 85
>54570_smo-miR156b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tgacagaagatagagagcac 34
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 116 ttcgtgctctctatacttctgtca 139
|||||||||||||| |||||||||
Sbjct: 77 ttcgtgctctctattcttctgtca 100
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51552_pta-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tgacagaagatagagagcac 34
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51551_pta-miR156a:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tgacagaagatagagagcac 34
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttgacagaagatagagagca 33
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>46862_aqc-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tgacagaagatagagagcac 34
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>46861_aqc-miR156a:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tgacagaagatagagagcac 34
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
