miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 119 bits (60), Expect = 6e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 1 gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
|||||||||||||||||||||||||||||||||| |||||| || | |||| |||| ||
Sbjct: 7 gcgagatattagtgcggttcaatcaaatagtcgtcctcttaactcgtggagaacggtgtt 66
Query: 61 gttcgattgagccgtgccaatatcacgc 88
||||||||||||||||||||||||||||
Sbjct: 67 gttcgattgagccgtgccaatatcacgc 94
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 2 cgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggttttg 61
||||||||| |||||||||||||| | | ||||||||| | ||| ||||||||||
Sbjct: 8 cgagatattggtgcggttcaatcagaaaaccgtactcttttgttttaaagatcggtttat 67
Query: 62 ttcgattgagccgtgccaatatcacgc 88
|| ||||||||||||||||||||||||
Sbjct: 68 tt-gattgagccgtgccaatatcacgc 93
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
||||| |||||||||||||||||||||||
Sbjct: 62 ttgtttgattgagccgtgccaatatcacg 90
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
||||| |||||||||||||||||||||||
Sbjct: 62 ttgtttgattgagccgtgccaatatcacg 90
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
||||| |||||||||||||||||||||||
Sbjct: 61 ttgtttgattgagccgtgccaatatcacg 89
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 ttgttcgattgagccgtgccaatatcac 86
||||| ||||||||||||||||||||||
Sbjct: 55 ttgtttgattgagccgtgccaatatcac 82
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 73 gattgagccgtgccaatatcacg 95
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 69 gattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 69 gattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 73 gattgagccgtgccaatatcacg 95
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 69 gattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 70 gattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 81 gattgagccgtgccaatatcacg 103
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 84 gattgagccgtgccaatatcacg 106
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 70 gattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tgttcgattgagccgtgccaatatcac 86
|||| ||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatatcac 134
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 70 gattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcac 86
||||||||||||||||||||||
Sbjct: 64 gattgagccgtgccaatatcac 85
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 attgagccgtgccaatatcacg 87
||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcac 86
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcac 86
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcac 86
||||||||||||||||||||||
Sbjct: 104 gattgagccgtgccaatatcac 125
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcac 86
||||||||||||||||||||||
Sbjct: 98 gattgagccgtgccaatatcac 119
