miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaacttccttgcttctttatcaaggatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaacttccttgcttctttatcaaggatggat 63
Query: 61 ttagatcatgtggtggtttcacctgttga 89
|||||||||||||||||||||||||||||
Sbjct: 64 ttagatcatgtggtggtttcacctgttga 92
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 99.6 bits (50), Expect = 6e-21
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaactt-ccttgcttctttatcaaggatgga 59
|||||||||||||||||||||||||||||||| || | | |||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaattaacctccttctttatcaaggatgga 63
Query: 60 tttagatcatgtggtggtttcacctg 85
|||||||||||||| ||||||||||
Sbjct: 64 -ttagatcatgtggtagtttcacctg 88
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaa 32
||||||||||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaa 32
||||||||||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 tagcagttgaagctgccagcatgatctaa 32
|||||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 tagcagttgaagctgccagcatgatctaa 32
|||||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 agcagttgaagctgccagcatgatctaa 32
||||||||||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaa 32
||||| ||||||||||||||||||||||||||
Sbjct: 4 cactatcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaa 32
||||||||||| ||||||||||||||||||||
Sbjct: 4 cactagcagttaaagctgccagcatgatctaa 35
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatctaa 32
||||| ||||||||||||||||||||||||||
Sbjct: 4 cactatcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tagcagttgaagctgccagcatgatct 30
|||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 tagcagttgaagctgccagcatgatct 30
|||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatct 30
|||||| |||||||||||||||||||||||
Sbjct: 4 cactagtagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactagcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||||||
Sbjct: 4 cactaccagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctaactt 35
|||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaactt 38
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 cagttgaagctgccagcatgatct 30
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctaac 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaac 36
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctaa 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctaa 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 agcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||
Sbjct: 8 agcagctgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 agcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||
Sbjct: 8 agcaggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 agcagttgaagctgccagcatgatct 30
||||| ||||||||||||||||||||
Sbjct: 8 agcagctgaagctgccagcatgatct 33
